Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j05
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    29   0.061
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    26   0.75 
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    24   3.0  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    23   4.0  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    23   4.0  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    23   5.3  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    23   5.3  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    22   9.3  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 29.5 bits (63), Expect = 0.061
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 148 VHGLSICQIMLYGYIVCFSYEFYYCYGFRMF 56
           VHGL  C ++LY Y  C S+ +YY Y +  F
Sbjct: 618 VHGL--CWVLLYYYQGCPSWTWYYPYHYAPF 646


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 186 LELLILLGHTMGAYTDYRYA 127
           +E +IL+GH+MG Y    YA
Sbjct: 171 IEKMILVGHSMGGYLSAVYA 190


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 14  TRLNIKL-LSTSFVFKHSKPITIVKLITETNNITI*HDLAYR 136
           TR N+ +   +  + K+     +  LIT + ++T  H L YR
Sbjct: 266 TRNNVSISFPSKLILKNKHHYILRSLITHSGSVTYGHYLCYR 307


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 14 TRLNIKLLSTSFVFKHSKPITI 79
          T+  ++LLS S  F + +P+TI
Sbjct: 5  TKFTLQLLSASAAFAYFEPLTI 26


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 165 GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 70
           GH M   TD  YA+ C   ++++   + T V+
Sbjct: 113 GHEMIFTTDDAYAEKCNDKVMYIDYKNITKVI 144


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  LNIKLLSTSFVFKHSKPITIVKL 88
           +++ L   S V+KHS P+T ++L
Sbjct: 284 MSLDLTKLSQVYKHSLPVTDMQL 306


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 127 QIMLYGYIVCFSYEFY 80
           Q + Y  ++CFSY +Y
Sbjct: 216 QNLYYDLLLCFSYSYY 231


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 44  SFVFKHSKPITI 79
           SF+FK +KP+T+
Sbjct: 118 SFLFKQNKPLTV 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,913
Number of Sequences: 5004
Number of extensions: 10041
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)