Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j05
         (188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0401 + 29038306-29038529,29038815-29038967,29039489-290402...    27   2.8  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    26   3.7  
08_01_0464 - 4092169-4092837,4093215-4093298,4094753-4094875,409...    26   3.7  
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    26   4.9  
05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320     25   6.4  

>01_06_0401 +
           29038306-29038529,29038815-29038967,29039489-29040296,
           29040393-29040488,29040982-29041251
          Length = 516

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 111 PYNMIWHIDNPCTRPLCG 164
           PY  +WH+  P   PL G
Sbjct: 33  PYRKVWHVPGPVPLPLIG 50


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 183 ELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIV 73
           E+ + +   +  + D  YAK  Y + LF+  ++F IV
Sbjct: 548 EIFVGICIILSGFYDVLYAKKGYYIFLFIQGLAFLIV 584


>08_01_0464 -
           4092169-4092837,4093215-4093298,4094753-4094875,
           4095001-4095042
          Length = 305

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 186 LELLILLGHTMGAYTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSS 31
           L L+  +G  + A TD  YA+  Y V   +  ++F +V+ + CL+   + +S
Sbjct: 255 LFLMASIGTGLEALTD-DYARKLYYVAAALLTVAFLLVVVVNCLRVSELPTS 305


>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 157 NGRVHGLSICQIMLYGYIVCFSYEFYYCYGFRMFE 53
           N  ++GL+I QI L G+I+ F +  Y  + + +F+
Sbjct: 381 NFSLYGLTINQITLPGWIMAFGWLVYLIWLWILFQ 415


>05_04_0315 - 20139544-20140545,20140674-20141547,20142313-20142320
          Length = 627

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 144 TDYRYAKSCYMVILFVSVMSFTIVMGLECLKT 49
           TD+ YA    +++L +S   F   + ++CLKT
Sbjct: 22  TDHYYAPLRLILLLILSATCFGSELDVQCLKT 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,144,520
Number of Sequences: 37544
Number of extensions: 53269
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)