Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j05
(188 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 25 5.6
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 25 5.6
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 25 5.6
U41746-6|AAA83333.1| 388|Caenorhabditis elegans Mediator protei... 25 7.5
AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine re... 25 7.5
Z83128-6|CAB05638.2| 353|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z81595-6|CAB04754.2| 295|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z81595-5|CAB04755.2| 289|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical pr... 25 9.9
U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical p... 25 9.9
EF445109-1|ABQ01576.1| 273|Caenorhabditis elegans scramblase 1 ... 25 9.9
AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical ... 25 9.9
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 123 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 25
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 123 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 25
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 123 SCYMVILFVSVMSFTIVMGLECLKTKLVDSSLM 25
+C+ + SVM I + C L+D+SL+
Sbjct: 349 ACFAIPYTTSVMQLVIPLSFVCFGIALIDTSLL 381
>U41746-6|AAA83333.1| 388|Caenorhabditis elegans Mediator protein
27 protein.
Length = 388
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 130 CQIMLYGYIVCFSYEFYYC 74
C + Y+ CFS + YYC
Sbjct: 338 CNNYIQSYVNCFSTKCYYC 356
>AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine
receptor, class x protein13 protein.
Length = 319
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -3
Query: 165 GHTMGAYTDYRYAKSCYMVILFVSVMSFTIVM 70
GH + YTDY + + ++ + V +M+ +++
Sbjct: 186 GHVISTYTDYYTSVAIFIAMSSVDIMTLILLI 217
>Z83128-6|CAB05638.2| 353|Caenorhabditis elegans Hypothetical
protein W01D2.4 protein.
Length = 353
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 175 YSIRPHNGRVHGLSICQIMLYGYIVCFSYEFYYCYGF 65
Y PH+ + IC I+LY Y+ SY + +G+
Sbjct: 196 YHSYPHSINNFAVGICTIILYLYL---SYRLIFKFGY 229
>Z81595-6|CAB04754.2| 295|Caenorhabditis elegans Hypothetical
protein T22H2.5b protein.
Length = 295
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NMIWHIDNPCTRPLCG 164
N+I+ ID PC LCG
Sbjct: 197 NVIFQIDGPCCCMLCG 212
>Z81595-5|CAB04755.2| 289|Caenorhabditis elegans Hypothetical
protein T22H2.5a protein.
Length = 289
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NMIWHIDNPCTRPLCG 164
N+I+ ID PC LCG
Sbjct: 197 NVIFQIDGPCCCMLCG 212
>Z68318-5|CAA92694.1| 418|Caenorhabditis elegans Hypothetical
protein T21B10.4 protein.
Length = 418
Score = 24.6 bits (51), Expect = 9.9
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 174 ILLGHTMGA-YTDYRYAKSCYMVILFVSVMSFTIVMGLECLKTKLVDSSLMFN 19
++LG T GA +T YR + M L+ S++ + G +C KL+ S M N
Sbjct: 249 VILGATGGAFFTSYR-KREGNMTKLYTSLVPANLSAGFKC--EKLIKPSSMPN 298
>U80444-11|AAB37793.2| 304|Caenorhabditis elegans Hypothetical
protein F26B1.1 protein.
Length = 304
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 105 LFVSVMSFTIVMGLECLKTKLVDS 34
+FVS++ T V+GLEC K K +S
Sbjct: 30 IFVSIL-LTPVIGLECAKKKKKES 52
>EF445109-1|ABQ01576.1| 273|Caenorhabditis elegans scramblase 1
protein.
Length = 273
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 117 NMIWHIDNPCTRPLCG 164
N+I+ ID PC LCG
Sbjct: 181 NVIFQIDGPCCCMLCG 196
>AF016670-6|AAB66103.2| 839|Caenorhabditis elegans Hypothetical
protein K02F6.3 protein.
Length = 839
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 78 IVMGLECLKTKLVDSSLMFNLV 13
++ LECLK K DSSL +L+
Sbjct: 534 LITTLECLKDKKFDSSLASDLM 555
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,859,339
Number of Sequences: 27780
Number of extensions: 55504
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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