Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j05
         (188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   0.77 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   0.77 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.2  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    19   7.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    18   9.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 114 YNMIWHIDNP 143
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 114 YNMIWHIDNP 143
           Y + WH+D P
Sbjct: 39  YELFWHVDQP 48


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 133 ICQIMLYGYIVCF 95
           I  ++L+G ++CF
Sbjct: 14  IINVLLHGQVICF 26


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 164 ATQWARTRIIDMPNHVIW 111
           A+++A  R+I +P + +W
Sbjct: 71  ASEFAGIRVIRVPYNRVW 88



 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = +3

Query: 111 PYNMIWHID 137
           PYN +W  D
Sbjct: 83  PYNRVWRPD 91


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 114 YNMIWHID 137
           YNM+ HID
Sbjct: 344 YNMLTHID 351


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 114 MVILFVSVMSFTIVM 70
           ++ILF+  ++ TIVM
Sbjct: 6   ILILFILSLTITIVM 20


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -1

Query: 137 IDMPNHVIW 111
           + +PNH +W
Sbjct: 105 MSIPNHYLW 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,347
Number of Sequences: 438
Number of extensions: 625
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)