Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j02
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336...    29   3.4  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    29   4.4  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    28   7.8  
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934...    28   7.8  

>04_03_0370 +
           15030829-15030837,15031579-15031957,15033434-15033626,
           15033859-15034102,15035383-15035445
          Length = 295

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 95  VPLSDAITFAEQKLNCKYKKIEF 27
           VP+   + FAEQ+ NC+YK+ E+
Sbjct: 32  VPMLSWLFFAEQQTNCRYKQTEW 54


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 594 YLTHIR-RYKKIIRCSLNFITLFTTKHN 674
           YL H+  R+ KI+ CSLN + L +TKH+
Sbjct: 608 YLRHLTLRHLKIV-CSLNLLRLMSTKHD 634


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 446  HDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEE 294
            H+ +ASN   +++K  KKEDG  H+V   +T   D + G N +    + ++
Sbjct: 2615 HNVLASNLGLDDVKITKKEDG--HMV---MTSGSDTMSGLNLLTYDTERKD 2660


>02_05_0685 +
           30891289-30891810,30892740-30892915,30893379-30893492,
           30893846-30893954,30894038-30894124,30895137-30895736,
           30895823-30896101,30896808-30896897,30897151-30897507,
           30897924-30898160,30898733-30898953,30899856-30899955,
           30900042-30900188,30900287-30900385
          Length = 1045

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 24/91 (26%), Positives = 40/91 (43%)
 Frame = -2

Query: 506 STLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGH 327
           S  T  Y  V NLL  +   H+   S++      KVK+   ++    + + Q+  N  G 
Sbjct: 522 SQFTASYGMVLNLLAGSKVTHNQKESDDI-----KVKRSGRTLEEARKLVEQSFGNYVGS 576

Query: 326 NFIVLSFKNEERLTIAKKNEEFYWISGEIKD 234
           N +V + +  ER+       E  ++S EI D
Sbjct: 577 NVMVAAKEELERI-----QSEIQYLSSEITD 602


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,512,102
Number of Sequences: 37544
Number of extensions: 307684
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)