Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11j02
(819 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anem... 31 1.4
AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-P... 31 1.4
BT012345-1|AAS77470.1| 378|Drosophila melanogaster AT05714p pro... 30 4.4
AY089294-1|AAL90032.1| 218|Drosophila melanogaster AT08722p pro... 30 4.4
AY061429-1|AAL28977.1| 306|Drosophila melanogaster LD35950p pro... 30 4.4
AE014297-4308|AAF56847.1| 306|Drosophila melanogaster CG11837-P... 30 4.4
AE013599-2239|AAF58023.2| 378|Drosophila melanogaster CG7755-PA... 30 4.4
AJ009736-3|CAA08808.1| 510|Drosophila melanogaster envelope pro... 29 5.8
AE014296-1378|AAF50482.1| 1417|Drosophila melanogaster CG7504-PA... 29 5.8
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 29 7.6
>AJ459772-1|CAD30834.1| 1478|Drosophila melanogaster Fanconi anemia
complementationgroup D2 protein protein.
Length = 1478
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 147 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL-FVFLSYSQPLFVFERQYYK 323
+++ + FT + ++L +I +N S+YI N+ R IKL + +S + + RQ+Y+
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVSILEEI----RQHYR 458
Query: 324 IVTFYIIHILSQILFD 371
+ I L IL D
Sbjct: 459 HILEQHITTLMNILHD 474
>AE014297-2866|AAN13836.2| 1478|Drosophila melanogaster CG17269-PA
protein.
Length = 1478
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 147 SALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKL-FVFLSYSQPLFVFERQYYK 323
+++ + FT + ++L +I +N S+YI N+ R IKL + +S + + RQ+Y+
Sbjct: 403 ASVPAAEFTSFDMILLLLLIHVNEDNSLYIENILRRRIKLEHITVSILEEI----RQHYR 458
Query: 324 IVTFYIIHILSQILFD 371
+ I L IL D
Sbjct: 459 HILEQHITTLMNILHD 474
>BT012345-1|AAS77470.1| 378|Drosophila melanogaster AT05714p
protein.
Length = 378
Score = 29.9 bits (64), Expect = 4.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 818 LTSYFNLDMYYAQTTFVTLLQSLGERKC 735
LT+Y NL Y +T V L Q LG KC
Sbjct: 306 LTNYANLSAYGIVSTIVDLFQHLGHDKC 333
>AY089294-1|AAL90032.1| 218|Drosophila melanogaster AT08722p
protein.
Length = 218
Score = 29.9 bits (64), Expect = 4.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 818 LTSYFNLDMYYAQTTFVTLLQSLGERKC 735
LT+Y NL Y +T V L Q LG KC
Sbjct: 146 LTNYANLSAYGIVSTIVDLFQHLGHDKC 173
>AY061429-1|AAL28977.1| 306|Drosophila melanogaster LD35950p
protein.
Length = 306
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = -2
Query: 644 IETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDNLNLIV----NKKSTLTYKYSSV 477
++ NNF P V + E K P P N D L I NK T+K +SV
Sbjct: 182 MKVGKNNFRPPPKVESSVVRLEP-KNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSV 240
Query: 476 ANLLFNNYKYHDNIASNNNAENLKKVKK 393
+L NYK + ++ + ++ K K
Sbjct: 241 LEMLEKNYKLYRSLRNEPIEDDFKMQDK 268
>AE014297-4308|AAF56847.1| 306|Drosophila melanogaster CG11837-PA
protein.
Length = 306
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = -2
Query: 644 IETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDNLNLIV----NKKSTLTYKYSSV 477
++ NNF P V + E K P P N D L I NK T+K +SV
Sbjct: 182 MKVGKNNFRPPPKVESSVVRLEP-KNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTSV 240
Query: 476 ANLLFNNYKYHDNIASNNNAENLKKVKK 393
+L NYK + ++ + ++ K K
Sbjct: 241 LEMLEKNYKLYRSLRNEPIEDDFKMQDK 268
>AE013599-2239|AAF58023.2| 378|Drosophila melanogaster CG7755-PA
protein.
Length = 378
Score = 29.9 bits (64), Expect = 4.4
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 818 LTSYFNLDMYYAQTTFVTLLQSLGERKC 735
LT+Y NL Y +T V L Q LG KC
Sbjct: 306 LTNYANLSAYGIVSTIVDLFQHLGHDKC 333
>AJ009736-3|CAA08808.1| 510|Drosophila melanogaster envelope
protein protein.
Length = 510
Score = 29.5 bits (63), Expect = 5.8
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -2
Query: 584 SESVKFPDNPPNKYVVDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLK 405
SE+ +P+ P +Y+VD L +N ++ + N++ YKY ++ E L+
Sbjct: 112 SEANNYPNVPQIQYLVDKLKREINGLRIISRSKRGLLNVVGKAYKYLFGTLDEDDREELE 171
Query: 404 K 402
+
Sbjct: 172 E 172
>AE014296-1378|AAF50482.1| 1417|Drosophila melanogaster CG7504-PA
protein.
Length = 1417
Score = 29.5 bits (63), Expect = 5.8
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = -2
Query: 428 NNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWIS 249
+ AE+ KK++K+ +H + ++ VKG + V K +L ++ E WI
Sbjct: 640 HQKAEDSKKLQKKLRKVHFNDDVKVHCIERVKGASSKVQGRKECIKLRLSSYRERREWIR 699
Query: 248 GEIKDVD 228
E K V+
Sbjct: 700 RENKPVN 706
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 29.1 bits (62), Expect = 7.6
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Frame = -2
Query: 599 QILKYSESVKFPDNPPNKYVVDNLNLIVNKKSTL--TYKYSSVANLLFNNYKYHDN---- 438
QI K S+++ N P + K ST+ T K S NL + K H N
Sbjct: 852 QIAKLSQNLILSKNTPIHKFLKPKKANKKKTSTIDRTIKLSLELNLPYKPIKLHKNKPPW 911
Query: 437 IASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFI 318
N +L+ KKE S + +N+K HNFI
Sbjct: 912 TLPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFI 951
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,059,155
Number of Sequences: 53049
Number of extensions: 586507
Number of successful extensions: 1677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3860063376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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