Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11j02
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-6|CAI79238.1|  143|Caenorhabditis elegans Hypothetical pr...    32   0.43 
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    30   1.7  
U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid elon...    29   3.0  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   5.3  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   5.3  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    28   7.0  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    28   7.0  
AL021497-17|CAD56613.1|  138|Caenorhabditis elegans Hypothetical...    28   7.0  
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle abno...    28   9.2  
S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.        28   9.2  
AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z80223-6|CAI79238.1|  143|Caenorhabditis elegans Hypothetical
           protein F26D10.13 protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = -2

Query: 461 NNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQ---YLTQNVDNVKGHNFIVLSFKNEER 291
           +N+ +     S  + E+LKK+ ++D +M   ++   ++T  V    G N+    F  EE 
Sbjct: 51  SNFNFKFCKVSGKSVEDLKKILEQDPNMSTTKKSNHFVTSKVTK-DGANY---KFDYEEF 106

Query: 290 LTIAKKNEEFYWISGEIKDVDASQV 216
           L +  KN+EFY   G I   DA +V
Sbjct: 107 LLL--KNDEFYKAEGTIYFQDAPKV 129


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = -2

Query: 443 DNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKKNEE 264
           ++I  ++ +   ++  +EDG+  + +QY  +N + V  H        NEE LT  K++E 
Sbjct: 54  ESIYDDDGSIQYEEYIEEDGTYDMNQQYGVENQEYVDAHYINT----NEEYLT-GKEHEM 108

Query: 263 FYWISGE---IKDVDASQVIQKYNRFKH 189
            Y + G    ++ +   + ++KY   KH
Sbjct: 109 VYQLFGNTATVEPISTEKRLEKYPELKH 136


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 198 SIIFLNYLTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIHILSQILFDNV 377
           SII   +L  V +F+L     K+   L+Y  PLF+       +  F+ +   +Q+ +   
Sbjct: 126 SIILFCFLRVVLLFSLDHVTEKIGRLLAYLSPLFIIFAFLLALPRFFTLSTCAQLGWPFP 185

Query: 378 HAAVLL 395
           H A+++
Sbjct: 186 HGAIII 191


>U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid
           elongation protein 3 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 470 LLFNNYKYHDNIASNNNAENLKKVKKE 390
           LLF N+ YH  +  NN    +KK KKE
Sbjct: 254 LLFANFFYHAYVKKNNRYTEVKKDKKE 280


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
 Frame = +3

Query: 201 IIFLNYLTSVYIFNLARNPIKLFVF-------LSYSQPL-FVFERQYYKIVTFYIIHILS 356
           I+F+ ++TS++IF++ +  I L +F       L Y  P+ F F+ Q +  +  YI  +  
Sbjct: 98  IMFIFFMTSIFIFHILQQTIHLLLFLLAIINSLKYHLPIHFAFKSQDF--IRKYITPL-- 153

Query: 357 QILFDNVHAAVLLLN 401
            + F ++ AA  +L+
Sbjct: 154 NVFFISLDAAAFMLH 168


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 677 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 555
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 244 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 284


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 677 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 555
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 348 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 388


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 572 KFPDNPPNKYVVDNLNLIVNKKSTLTYKYSS--VANLLFNNYKYHDNIASN 426
           +FP +P +  ++DN+++I  K+       S   + N+  +N K+ DN  S+
Sbjct: 505 EFPSSPLHAVLLDNVSVIEQKRGHAGILISGGWIQNVGMHNLKFKDNAVSS 555


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -2

Query: 659 KESNEIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNLIVNKKSTLTYKYS 483
           +E N+ E   + F+VS  + +    S+ VKFP  N   KY     N    ++S +TY   
Sbjct: 627 REYNK-EKEKHPFYVSSSLPEFASTSDFVKFPISNTGIKYTAPRRNQPKVQRSLVTYTRF 685

Query: 482 SVANLLFNNYKYHDNIASNNNAENLKKVKKED 387
            +A L   ++ + +      N   L+K+  E+
Sbjct: 686 RLAELEDKDFSFPEEKMLEKN-RLLEKLNFEE 716


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 647 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 522
           E++  S  ++ S  +SQ+L+Y+    FP D PPN+ V  N+ L
Sbjct: 219 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 257


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 647 EIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNL 522
           E++  S  ++ S  +SQ+L+Y+    FP D PPN+ V  N+ L
Sbjct: 382 ELDPQSTQYYASIPLSQMLQYA----FPRDFPPNRIVNPNMKL 420


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -2

Query: 659 KESNEIETASNNFFVSPYVSQILKYSESVKFP-DNPPNKYVVDNLNLIVNKKSTLTYKYS 483
           +E N+ E   + F+VS  + +    S+ VKFP  N   KY     N    ++S +TY   
Sbjct: 627 REYNK-EKEKHPFYVSSSLPEFASTSDFVKFPISNTGIKYTAPRRNQPKVQRSLVTYTRF 685

Query: 482 SVANLLFNNYKYHDNIASNNNAENLKKVKKED 387
            +A L   ++ + +      N   L+K+  E+
Sbjct: 686 RLAELEDKDFSFPEEKMLEKN-RLLEKLNFEE 716


>AL021497-17|CAD56613.1|  138|Caenorhabditis elegans Hypothetical
           protein Y51A2D.20 protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 605 VSQILKYSESVKFPDNPPNKYVVDNLNLIVNKKSTLTYKYSSV 477
           + + L Y E+V  P NPP+  + +N +L  N +ST+ ++Y  V
Sbjct: 99  IDKTLSYYENVNLPQNPPD--LPENSDLKPN-ESTIWHEYGCV 138


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 698 DKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPD 561
           D   ++  ++LSR+E+  +E  S+  +   Y  QI+K     K PD
Sbjct: 324 DAATWSSAVVLSRRENEGLEVMSDARYAPIYCEQIVKGLSYTKCPD 369


>U29082-8|AAA68405.1|  228|Caenorhabditis elegans Sex muscle
           abnormal protein 5 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 314 LSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHMFVISKVNRRES 150
           LSFK    L +  K+E+ +W   E+ D +   +   Y R     + + K+ R ++
Sbjct: 17  LSFKRGNTLKVLNKDEDPHWYKAEL-DGNEGFIPSNYIRMTECNWYLGKITRNDA 70


>S88446-1|AAB21850.1|  228|Caenorhabditis elegans sem-5 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 314 LSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYNRFKHHMFVISKVNRRES 150
           LSFK    L +  K+E+ +W   E+ D +   +   Y R     + + K+ R ++
Sbjct: 17  LSFKRGNTLKVLNKDEDPHWYKAEL-DGNEGFIPSNYIRMTECNWYLGKITRNDA 70


>AC006625-4|AAK68276.1|  446|Caenorhabditis elegans Hypothetical
           protein C55B7.5 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 485 SSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNV 345
           +SV  L  ++Y   DNI  +NN++   K KK +  +  VE+ + + V
Sbjct: 288 NSVEELDSDDYASDDNIEKSNNSDQQLKSKKIETQVIKVEEIVEETV 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,839,407
Number of Sequences: 27780
Number of extensions: 341157
Number of successful extensions: 1025
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)