Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11i24
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 308 5e-85
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 139 6e-34
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 98 2e-21
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 97 4e-21
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 95 2e-20
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 67 3e-12
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 64 3e-11
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 45 2e-05
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.87
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 29 1.2
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 28 1.5
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.0
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 3.5
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 6.1
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 6.1
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 26 8.1
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 26 8.1
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 308 bits (757), Expect = 5e-85
Identities = 143/271 (52%), Positives = 209/271 (77%), Gaps = 1/271 (0%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAA 665
VV++AG++L AEKLL+KGIHPTVI++ FQ+A + ++ + ++L++ ++LL+AA
Sbjct: 96 VVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAAT 155
Query: 664 TSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVEDAELIQ 485
TSLNSK+VSQ+S +LAPIAV A+ V++P V+ VDL+D+++++++GG ++D ELI
Sbjct: 156 TSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVA---TNVDLKDIRIVKKLGGIIDDTELIP 212
Query: 484 GLVIPHRAA-NVNGPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERQYI 308
GL + A + GP RIEKA + LIQF +SPPK DM++ V+V+DY MD++LKEERQY+
Sbjct: 213 GLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYL 272
Query: 307 LNIVKQIKKAGCNVLLVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVCKTLGCR 128
LN+ K+IKKAG NV+L+QKSILRDA++DLA+HFL K+K MVIKDIER+++EF+CK+ GC+
Sbjct: 273 LNMCKKIKKAGANVILIQKSILRDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCK 332
Query: 127 PIASLDHFTAENLVNVDLVEEINEXWWKIYK 35
PIA ++ F + L + DLVEE + KI K
Sbjct: 333 PIADIESFAEDKLGHADLVEETSSSGEKIVK 363
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -1
Query: 878 QDIEAGDGTTS 846
QD+EAGDGTTS
Sbjct: 85 QDVEAGDGTTS 95
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 139 bits (336), Expect = 6e-34
Identities = 82/264 (31%), Positives = 146/264 (55%), Gaps = 2/264 (0%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDA--LLKA 671
VVV+AGALL+ AE L+ KGIHP I+DG++KA Q+A++ ++ +S VD + E+ L ++
Sbjct: 111 VVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRS 170
Query: 670 AATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVEDAEL 491
A TSL SKVVS+ A IAV A+ +V + V D +KV ++GG+V+D +L
Sbjct: 171 AKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDV----DFELIKVDGKVGGSVDDTKL 226
Query: 490 IQGLVIPHRAANVNGPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERQY 311
++G+V+ ++ PHRIE AK+ ++ PPK H + ++ + + + E++
Sbjct: 227 VKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEK 286
Query: 310 ILNIVKQIKKAGCNVLLVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVCKTLGC 131
++K +K AG N+++ Q D A H L + ++ + +IE +
Sbjct: 287 FQEMIKHVKDAGANLVICQW-----GFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNG 341
Query: 130 RPIASLDHFTAENLVNVDLVEEIN 59
R + + +++ L + +V E++
Sbjct: 342 RIVPRFEDLSSDKLGSAGIVREVS 365
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 97.9 bits (233), Expect = 2e-21
Identities = 69/259 (26%), Positives = 135/259 (52%), Gaps = 7/259 (2%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAA 665
V ++ G LL AE +++G+HP++ISDGF A AL +++ T +++ E LL A
Sbjct: 93 VCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEVDRE-VLLNVAK 151
Query: 664 TSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVEDAELIQ 485
TSL++K+ S+ LAP V AI + P +DL V++++ + D +LI+
Sbjct: 152 TSLSTKISSKVVESLAPAVVDAILTIRRP-----DEPIDLHMVEIMKMQNRSASDTQLIR 206
Query: 484 GLVIPHRAANVNGPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERQYIL 305
GL++ H A + + P +++ A + ++ + K++++ S +R+++ ER+++
Sbjct: 207 GLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEINSGFFYSTSEQRERLVESERKFVD 266
Query: 304 NIVKQI---KKAGCNVLLVQKSIL--RDALSDLAVHFLDKIKTMVIKDIEREDIEFVCKT 140
N +++I KK C ++ + + L++ L K M ++ +R ++E +
Sbjct: 267 NKLRKIVELKKEVCERDPTANFVIINQKGIDPLSLDVLAKNGIMALRRAKRRNMERL--Q 324
Query: 139 LGCRPIA--SLDHFTAENL 89
L C +A S+D E L
Sbjct: 325 LACGGVAQNSVDDLNPEVL 343
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 96.7 bits (230), Expect = 4e-21
Identities = 55/246 (22%), Positives = 128/246 (52%), Gaps = 1/246 (0%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAA 665
V+++AG +L +A LL + IHP V+ F++AL+ AL +++ ++ PV++++ + +
Sbjct: 96 VIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIR 155
Query: 664 TSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERI-GGTVEDAELI 488
T + +K+V++ S ++ +A++A+R V S +D++ +E++ GG +E + ++
Sbjct: 156 TCIGTKLVARWSDLMCHLALRAVRTVAS--TSNGRMEIDIKRYARVEKVPGGEIESSCVL 213
Query: 487 QGLVIPHRAANVNGPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERQYI 308
G+++ + RIE ++ L+ + K + N+ +S +R+L+ E + +
Sbjct: 214 DGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGESQTNIEISKDTDWNRILEIEEEQV 273
Query: 307 LNIVKQIKKAGCNVLLVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVCKTLGCR 128
+ I ++++ +K + SDLA H+L K ++ + D + + G
Sbjct: 274 KRMCDYIIAVKPDLVITEKGV-----SDLAQHYLLKANITALRRTRKSDNNRIARACGAN 328
Query: 127 PIASLD 110
+ L+
Sbjct: 329 IVNRLE 334
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 94.7 bits (225), Expect = 2e-20
Identities = 64/263 (24%), Positives = 137/263 (52%), Gaps = 2/263 (0%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPV--DLNNEDALLKA 671
VVV G LL AE +++ G+ P I+ G++ AL ++V+E + + +E L+KA
Sbjct: 103 VVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKA 162
Query: 670 AATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVEDAEL 491
T ++SK L+ + +AI V+ S + ++ +++V++ +G ++ ++++
Sbjct: 163 IRTCISSKQYGNED-FLSDLVAKAILTVLPKDPS----KFNVDNIRVVKIMGSSLYNSQV 217
Query: 490 IQGLVIPHRAANVNGPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLKEERQY 311
++G+V P R ++AKV + + +T+ V++ + M K E
Sbjct: 218 VKGMVFPREPEGT--VTRSKEAKVAVFSCPLDISQTETKGTVLLHNAQEMLDFSKGEENL 275
Query: 310 ILNIVKQIKKAGCNVLLVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVCKTLGC 131
I + +K+I AG V++ ++ +DL +H+L++ + +VI+ + ++ +C+ +G
Sbjct: 276 IESHIKEIYDAGVRVVVTSGNV-----NDLVLHYLNRFEILVIRVPSKFELRRLCRVVGA 330
Query: 130 RPIASLDHFTAENLVNVDLVEEI 62
P+A + E + +VD+VE I
Sbjct: 331 TPLARMGVPMPEEMGSVDVVETI 353
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 67.3 bits (157), Expect = 3e-12
Identities = 66/267 (24%), Positives = 124/267 (46%), Gaps = 6/267 (2%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV-----VENMSTPVDLNNEDAL 680
V V A LL AE ++ IHP VI DG++ A + A+ ++N S P ++ L
Sbjct: 98 VCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFRSD--L 155
Query: 679 LKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVED 500
A T+L+SK++SQ+ A +AV A+ + +L ++++I+ +GG ++D
Sbjct: 156 ENIARTTLSSKILSQNKNHFAQLAVDAVLRLK--------GSTNLDNIQIIKILGGKLDD 207
Query: 499 AELIQGLVIPHRAANVNGPHRIEKAKVGLIQFCISPPKTDM-DHNVIVSDYAAMDRVLKE 323
+ L +G ++ ++ VN P +E A + + + K + V V + + +
Sbjct: 208 SFLDEGFIL-NKTIGVNCPKVMENANILIANTAMDTDKVKVFGARVRVDTTGKLAELERA 266
Query: 322 ERQYILNIVKQIKKAGCNVLLVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVCK 143
ER+ + V++IK N + + ++ + L F D M I+ + + IE +
Sbjct: 267 EREKMKAKVEKIKSHNIN-CFINRQLIYNWPEQL---FAD-AGIMSIEHADFDGIERLSL 321
Query: 142 TLGCRPIASLDHFTAENLVNVDLVEEI 62
G ++ DH L + +EEI
Sbjct: 322 VTGGEIASTFDHPELVKLGHCKKIEEI 348
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 63.7 bits (148), Expect = 3e-11
Identities = 60/267 (22%), Positives = 119/267 (44%), Gaps = 7/267 (2%)
Frame = -2
Query: 844 VVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNE----DALL 677
VVV AG LL A ++ G+ +I G++KA QLA+ ++ ++ +DL++E D L
Sbjct: 101 VVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLT 160
Query: 676 KAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVEDA 497
K A+T++NSK++ +ST + V A+ + + ++ ++ +K + GG +ED+
Sbjct: 161 KCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLN-----ENMIGIKKVP--GGAMEDS 213
Query: 496 ELIQGLVIPHR---AANVNGPHRIEKAKVGLIQFCISPPKTDMDHNVIVSDYAAMDRVLK 326
L++G+ A P + K+ + + + V V ++
Sbjct: 214 LLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELELKAEKDNAEVRVDKVQEYQNIVD 273
Query: 325 EERQYILNIVKQIKKAGCNVLLVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVC 146
E + I + ++ I G V+L + I DLA + + +D+ V
Sbjct: 274 AEWRIIFSKLEAIVATGAKVVLSKLPI-----GDLATQYFADRDIFCAGRVAADDLNRVV 328
Query: 145 KTLGCRPIASLDHFTAENLVNVDLVEE 65
+ +G ++ + ++L D EE
Sbjct: 329 QAVGGSIQSTCSNIEEKHLGTCDTFEE 355
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 44.8 bits (101), Expect = 2e-05
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Frame = -2
Query: 562 GARVDLRDVKVIERI-GGTVEDAELIQGLVIPHRAANVNGPHRIEKAKVGLIQFCISPPK 386
G +D+R I++I GG+++D L+ G++ +A++ + + + ++ L+ F
Sbjct: 516 GDDIDVRSYVKIKKIPGGSIQDCFLVNGVLFSKKASSKSMDRSLRRPRIALLTF------ 569
Query: 385 TDMDHNVIVSDYAAMDRVLKEERQYILNIVKQIKKAGCNVLLVQKSILRDALSDLAVH-- 212
+D+ ++D ++ ++ +YI+N+V +I N++ Q I AL H
Sbjct: 570 -SLDYACDEQRILSLDLIISQQEEYIINLVNRICMLKPNLVFAQGQIPSIALKYFEEHGV 628
Query: 211 -FLDKIKTMVIKDIER 167
+K V+ DI R
Sbjct: 629 IAFHGLKESVLYDIAR 644
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 668 CNITKFQSSFTTLNYFGTHCSASNSS 591
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -2
Query: 694 NEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIG 515
+ED L ATS +K S + A++ + ++P +S A +R+ +I
Sbjct: 50 SEDILRTGGATSETTKDASAAGPVTPSFAMKRSQTSVQPSMSSQIAIGGMRNPMATRKIA 109
Query: 514 GTVEDA 497
GT DA
Sbjct: 110 GTYRDA 115
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 453 TLAARCGMTNPWISSASSTVPPIRSMTFTSLRSTLAPTPLTIGSITA 593
TLA G +I+++S+ V IRS+ + +T P + +G++TA
Sbjct: 374 TLAKSYGCVGGYIAASSTLVDMIRSLAPGFIFTTSLPPHVMVGALTA 420
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = -2
Query: 262 LVQKSILRDALSDLAVHFLDKIKTMVIKDIEREDIEFVCKTLGCRPIASLDHFTAENLVN 83
L + L + + D + K+ T++ + E ++ + +TLG P SLD +
Sbjct: 352 LTDQEFLNENMLDYFQRYNQKLLTVLSSNAESFNVSDM-QTLGLNPCHSLDKSFVSEISQ 410
Query: 82 VDLVEEINEXWWKIYKGKLRWLK 14
+ L + IN W+ GK WL+
Sbjct: 411 IWLKKHIN---WQY--GKYFWLR 428
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +3
Query: 492 SSASSTVPPIRSMTFTSLRSTLAPTPLTIGSITARIACTA 611
S++SST P S T +S S+ + TP++ SIT+ I+ +A
Sbjct: 141 STSSSTATPSSSSTTSSSSSSSSSTPIS-SSITSSISSSA 179
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 155 FNVFTFNIFNDHCFNFV*EMYSQ 223
F +FTFN F C NF E Q
Sbjct: 462 FEIFTFNSFEQLCINFTNEKLQQ 484
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 3.5
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Frame = -2
Query: 877 KILKLVMEQHPVVVIAGALLDSAEKLLQKGI---HPTVISD---GFQKALQLALQVVENM 716
KI++L + +I+ A L + + GI +++D F A L + N+
Sbjct: 2473 KIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIPQSFGNAKNLVEALKVNI 2532
Query: 715 STPVDLNNED---ALLKAAATSL-NSKVVSQHSTILAPIAVQAIRAVMEPI 575
P + + ALL S N ++ H +ILAP +RA++ P+
Sbjct: 2533 EAPPSTSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPV 2583
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 566 TTNNRFHYCSNC--LHCNGCQNS*VL*NYFGI 655
T NR H+C NC + CN C + + + GI
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGI 215
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 6.1
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = -2
Query: 865 LVMEQHPVVVIAGALLDSAEKLLQKGIH---PTVISDGFQKALQLALQVVENMSTPVDLN 695
L M V A LD + +H +I+ AL +VE+ STP L
Sbjct: 502 LEMPSFVVYTYAAIALDQLLTVRHNHVHIFTSLLIAPHILPALNQLFLIVESASTPQKLA 561
Query: 694 NEDALLKAAATSLNSKVVSQHSTI-LAPIAVQAIRAVMEPI 575
D L+KA + ++SQ + + A + +Q + + E +
Sbjct: 562 ENDYLMKAVMRII---IMSQEAILPAASLLLQHLTKITEEV 599
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = -2
Query: 802 LLQKGIHPTVISDGFQ--KALQLALQVVENMSTPVDL---NNEDALL 677
+L +G ++ D Q K + AL+V++NM T VDL N ALL
Sbjct: 375 ILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASALL 421
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 793 SEEVSQQNPTTHQQ*QLLDVVPSPAS 870
++ + QNPT HQQ QL+ V S ++
Sbjct: 215 ADRLHTQNPTFHQQNQLVSTVMSAST 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,708,646
Number of Sequences: 5004
Number of extensions: 79371
Number of successful extensions: 259
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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