Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i24
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   4.9  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 688 LHYSSPLELTYFRPPVKPIEGLFGNHQKLQLDVCLSEEVSQQNPTTHQ 831
           L   + L+ TYF       E L G H+K  L+  LS   + + P  ++
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANE 76


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 688 LHYSSPLELTYFRPPVKPIEGLFGNHQKLQLDVCLSEEVSQQNPTTHQ 831
           L   + L+ TYF       E L G H+K  L+  LS   + + P  ++
Sbjct: 29  LRTRTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANE 76


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 258 TKSTLQPAFLICFTIFKIYWRSSFNTRSI 344
           T S   P F++ FT +KIY  +   T+S+
Sbjct: 212 TISFYLPLFVMVFTYYKIYRAAVIQTKSL 240


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 12  TFNHLNLPLYIFHQXSFISST 74
           TFN  N+  Y+++Q   +SST
Sbjct: 378 TFNQTNVDQYLYNQTGPLSST 398


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 486 WISSASSTVPPIRSMTFTSLR 548
           WI  AS T+P   S  FT+ +
Sbjct: 548 WIYPASMTIPGSNSAVFTNYK 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,383
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)