Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i23
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    30   0.098
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   3.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    24   6.4  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   8.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    24   8.5  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    24   8.5  

>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 30.3 bits (65), Expect = 0.098
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -1

Query: 340 FNKRSIMNSGDDDA---TRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNL 170
           F+ R+++ S D+D     RL+YS   A     T +A  +  S    A+  V+ +  KNNL
Sbjct: 140 FSLRTVLQSRDEDLLWRARLYYSFLQADMDYLTNYARPSPDSAVPGAVGTVAIITSKNNL 199

Query: 169 N 167
           +
Sbjct: 200 S 200


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 190 LLFKNNLNLMVACNLINT 137
           LLFKN+L L+ AC  +NT
Sbjct: 156 LLFKNSLVLLAACYFMNT 173


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 199 VSTLLFKNNLNLMVACNLINTLINFEINVFGKVYC*VNL 83
           +STL+ +   +    C   + +I F  NV  +VYC +N+
Sbjct: 284 ISTLMEQGFWSFEAICIYSDNIIRFGSNVTLQVYCFINV 322


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 172 LNLMVACNLINTLINFEINVFG 107
           +N+ V+  L+NTLI  +I  FG
Sbjct: 183 VNICVSAKLVNTLIIEQIKFFG 204


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -1

Query: 283 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFGK 104
           S+A   Q + T F     S+ YEY     +    + N N + A  L N + +  I+ F K
Sbjct: 296 SSAQIVQVILTRFQRVTFSTGYEYLGLSDAIFSIEKNFNSLTAYELPNYIRSDIIDDFKK 355


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 328 SIMNSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 182
           S+  S DD A+         +  + T  A    SS   Y  TFVST L+
Sbjct: 69  SVTESSDDGASTA-LPTTSTESVVVTTSAPAASSSATSYPATFVSTPLY 116


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 319 NSGDDDATRLHYSNAHAKQTLATLFANRNHSSFYEY 212
           N  D    R HY + H+ Q       N N SS+  +
Sbjct: 329 NIDDSSIERRHYDSNHSSQIRDHPSTNNNASSYQNF 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,317,198
Number of Sequences: 5004
Number of extensions: 22257
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)