Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i23
         (367 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113476-1|AAM29481.1|  367|Drosophila melanogaster RE43986p pro...    30   0.81 
AE013599-780|AAF58992.1|  367|Drosophila melanogaster CG13741-PA...    27   5.7  

>AY113476-1|AAM29481.1|  367|Drosophila melanogaster RE43986p
           protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -1

Query: 133 INFEINVFGKVYC 95
           INFEIN FGKVYC
Sbjct: 88  INFEINDFGKVYC 100


>AE013599-780|AAF58992.1|  367|Drosophila melanogaster CG13741-PA
           protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 133 INFEINVFGKVYC 95
           INFEIN F KVYC
Sbjct: 88  INFEINDFDKVYC 100


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,120
Number of Sequences: 53049
Number of extensions: 221897
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 943048980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)