Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i23
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    29   1.0  
Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    26   9.5  
M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.     26   9.5  
AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut ...    26   9.5  

>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 265 QTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVF 110
           +++ +++A R    F E  I F   LLF     L   C LIN LI   ++ F
Sbjct: 613 ESVMSVYA-RPLDDFLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663


>Z74034-4|CAE17842.2|  319|Caenorhabditis elegans Hypothetical
           protein F43A11.3 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 169 NLMVACNLINTLINFEINVFGKVYC*VNLLIFALLTATGLRFNIKC 32
           N   + N+I+ + NF   +FG V C  N++   L +     FN+ C
Sbjct: 10  NYQNSVNVISAVFNFVFGIFG-VICNFNIISIFLTSTERTSFNLIC 54


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 292 LHYSNAHAKQTLATLFA-NRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 137
           LH+ NA+ +  + TL A NR  S F+ +    + ++LF  +L  ++   +  T
Sbjct: 98  LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150


>Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical
           protein M01B2.6 protein.
          Length = 450

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -1

Query: 289 HYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 137
           +YS     +      +   H+ F    +TF  TL+F+N    M   N+  T
Sbjct: 98  YYSGTSDSEITINQVSKLTHAIFAFVQLTFDGTLVFRNKNRFMALRNIAKT 148


>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 283 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 182
           +NA     LATL A+   +  Y+Y    +ST LF
Sbjct: 178 TNASVGNILATLIASWTVNIGYQYPFLIISTALF 211


>M96145-1|AAA28057.1|  562|Caenorhabditis elegans elastase protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 83  VNFCIANSDGVTIQHKMLTNVLSF 12
           VNF    SDGV+I+H +    L+F
Sbjct: 511 VNFLNIRSDGVSIEHGLFQEPLAF 534


>AF016680-3|AAB66165.2|  562|Caenorhabditis elegans Abnormal gut
           esterase protein 1 protein.
          Length = 562

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 83  VNFCIANSDGVTIQHKMLTNVLSF 12
           VNF    SDGV+I+H +    L+F
Sbjct: 511 VNFLNIRSDGVSIEHGLFQEPLAF 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,233,531
Number of Sequences: 27780
Number of extensions: 124617
Number of successful extensions: 265
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)