Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i21
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...   260   1e-70
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    42   1e-04
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   1.4  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   3.3  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.8  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   7.6  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   7.6  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score =  260 bits (638), Expect = 1e-70
 Identities = 120/184 (65%), Positives = 149/184 (80%)
 Frame = -3

Query: 835 EVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFI 656
           EVA++LQK+YG  KI+L+PR  KLGLGTAYIHG++ A+G+F+IIMDAD SHHPK++PEFI
Sbjct: 50  EVAKELQKIYGEDKILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDADFSHHPKYLPEFI 109

Query: 655 KLQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKK 476
           KLQ +++YDIV GTRY   GGVYGW+ KRK ISRGAN L   +L  GVSD+TGSFRLYKK
Sbjct: 110 KLQKEHNYDIVLGTRYAKDGGVYGWNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYKK 169

Query: 475 EALEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQFAKA 296
             LE L+    SKGYVFQME+I RAR+ +Y+IGEVPI+FVDR+YGESKLG  +I+ + K 
Sbjct: 170 PVLETLMSEVTSKGYVFQMEIIARAREHNYTIGEVPIAFVDRLYGESKLGMDDILGYLKG 229

Query: 295 LLYL 284
           +  L
Sbjct: 230 VFSL 233


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
 Frame = -3

Query: 763 GLGTAYIHGIQQASGNFIIIMDAD-LSHHPKFIPEFIKLQLKYDYDIVSGTRYK--GSGG 593
           G G A   G+  A G + I  DAD  S        F  +       +V G+R     +  
Sbjct: 143 GKGGAVTWGMLYARGQYAIFADADGASQFSDLELLFKNMPPGPRGGVVVGSRAHMVNTAA 202

Query: 592 VYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEALEKLILSCVSKGYVFQMEM 413
           V    F R  +    + L Q++    + D    F+L+ +EA + +      +G++F +E+
Sbjct: 203 VVKRSFIRNFLMHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262

Query: 412 IIRARQFDYSIGEVPISF 359
           +  AR F   I EVPI++
Sbjct: 263 LTLARFFGLPIIEVPITW 280


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 508 DLTGSFRLYKKEALEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYG 341
           D  G FR++  E +E+ +L+   K +    EMI  A  F Y   E+P   V  V G
Sbjct: 280 DAWGIFRVHAFEKIEQFVLTDPEKSWEAFTEMINHAEDF-YKSLELPYRIVAIVSG 334


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 770 EAWTRNCLHSWDTASFWKFYY 708
           E + +NC   WD++ FWK ++
Sbjct: 41  EKYAKNCNTIWDSSKFWKQFF 61


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 382 IGEVPISFVDRVYGESKLGGSEIVQFAKAL 293
           IG   + F+D   G+ +LGGS + Q  K L
Sbjct: 840 IGSTSLIFIDLANGKQRLGGSILAQSYKQL 869


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 131 IYFLFSALRINRIVGFLLFITIV 199
           IY   +  R+NR++G LLFI  +
Sbjct: 706 IYVPLNRFRVNRVLGLLLFILYI 728


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 132 ILLGLSFIIYGVNYIMKKTYILEHKN*FFYCFYLSSAF 19
           + LG S ++  +  +++K  IL        CF+LSS F
Sbjct: 271 VSLGYSIVVPSLGSLLRKCQILAGLQFVSSCFFLSSLF 308


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 789 CFDLAR*SLDSELPTFMGYSKLL 721
           C+D+ R +LD E PT+   ++L+
Sbjct: 213 CYDICRRNLDIERPTYENLNRLI 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,939
Number of Sequences: 5004
Number of extensions: 73166
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)