Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i21
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...   235   2e-62
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887...    31   1.5  
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948...    30   2.0  
10_01_0318 + 3493913-3496976,3497064-3497392                           28   8.0  

>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score =  235 bits (576), Expect = 2e-62
 Identities = 117/205 (57%), Positives = 149/205 (72%), Gaps = 17/205 (8%)
 Frame = -3

Query: 835 EVARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFI 656
           ++ +QLQ++YG ++++LR R  KLGLGTAY+HG++ ASG+F++IMDADLSHH   I E +
Sbjct: 56  DIVKQLQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHMLEISETL 115

Query: 655 -----------------KLQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLM 527
                            K Q +   D+V+GTRY  +GGV+GW+  RKL SRGAN L Q +
Sbjct: 116 EQSPLQLDSYQGYYTDKKKQKETGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTL 175

Query: 526 LRPGVSDLTGSFRLYKKEALEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRV 347
           L+PG SDLTGSFRLYK+  LE LI SCVSKGYVFQMEMI+RA +  Y I EVPI+FVDRV
Sbjct: 176 LQPGASDLTGSFRLYKRNVLEDLISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRV 235

Query: 346 YGESKLGGSEIVQFAKALLYLFATT 272
           +G SKLGGSEIV++ K L+YL  TT
Sbjct: 236 FGTSKLGGSEIVEYLKGLVYLLLTT 260


>08_01_0900 +
           8867895-8868938,8869887-8870085,8871500-8871713,
           8871854-8871959,8872077-8872199
          Length = 561

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -3

Query: 400 RQFDYSIGEVPISFVDRVYGESKLGGSEIVQF-AKALLY 287
           +Q +  IGE+P++FV +  G S+L   ++ QF AK ++Y
Sbjct: 487 KQIEPEIGEIPVAFVAKTEG-SELSEDDVKQFVAKEVIY 524


>03_02_0565 -
           9484045-9484335,9484621-9484686,9484790-9484867,
           9485005-9485157,9485271-9485356,9485445-9485551,
           9485685-9485752,9485890-9485912,9487627-9487732,
           9487772-9487899,9487989-9488065,9488126-9488131,
           9488206-9488264
          Length = 415

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 712 IIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYG 584
           +I  D DL HH  F P    LQ    +   S   Y G   +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198


>10_01_0318 + 3493913-3496976,3497064-3497392
          Length = 1130

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 704 YNNKISRSLLYPMNVGSSESKLHLARSKHYFRGAI 808
           YNN  +  L   + + ++   LH+  ++++FRGAI
Sbjct: 449 YNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAI 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,632,999
Number of Sequences: 37544
Number of extensions: 413479
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)