Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i21
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical ...   274   7e-74
Z22179-6|CAA80163.2|  165|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA hai...    28   9.5  
AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone stem-...    28   9.5  

>AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical
           protein Y66H1A.2 protein.
          Length = 239

 Score =  274 bits (671), Expect = 7e-74
 Identities = 130/185 (70%), Positives = 147/185 (79%)
 Frame = -3

Query: 832 VARQLQKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIK 653
           +A+ LQK YG  KI+++PR  KLGLGTAY HG+  A G FII+MDADLSHHPKFIPE I 
Sbjct: 52  IAKLLQKEYGDDKILIKPRVGKLGLGTAYSHGLSFARGEFIILMDADLSHHPKFIPEMIA 111

Query: 652 LQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKE 473
           LQ KY  DIV+GTRYK  GGV GWD KRK IS+GANFL Q +L PGVSDLTGSFRLYK++
Sbjct: 112 LQHKYKLDIVTGTRYKDGGGVSGWDLKRKTISKGANFLAQFLLNPGVSDLTGSFRLYKRD 171

Query: 472 ALEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQFAKAL 293
            L KLI   VSKGYVFQMEM+ RA++  Y IGEVPISFVDR +GESKLG  EIV +AK L
Sbjct: 172 ILSKLIAESVSKGYVFQMEMMFRAKKSGYRIGEVPISFVDRFFGESKLGSQEIVDYAKGL 231

Query: 292 LYLFA 278
           LYLFA
Sbjct: 232 LYLFA 236


>Z22179-6|CAA80163.2|  165|Caenorhabditis elegans Hypothetical
           protein F58A4.6 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 671 ELWMMAQIRIHYNNKISRSLLYPMNVGSSESKLHLA---RSKHYFRGAIQLLQL 823
           E +  AQIR  YN  + + LL  + V +    L  A   R KH+FR  + L +L
Sbjct: 39  EEYSFAQIRAFYNIPVDKKLLVNIQVKNPAQNLDYAWERRLKHHFRYMLDLEKL 92


>U40423-3|AAA81452.1|  327|Caenorhabditis elegans Hypothetical
           protein C24H10.2 protein.
          Length = 327

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 31  QIKTVEKLIL----MF*DISLLHNIINAIDNKR*TKKYIFSI*CSTDQSDRW 174
           +I+ +E+L++    +F  I   HN+   ++++R  K+ +F + CS D+ D +
Sbjct: 196 EIEDIERLVVHYDGVFQAIKYFHNLDLFMEHQRAEKRNLFGLDCSDDEDDHF 247


>Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical
           protein R06F6.1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 743 SWDTA-SFWKFYYYNGCGFEPSSKVHS 666
           SWDT    WK   Y  CG EPS  V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285


>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 400 RQFDYSIGEVPISFVDRVYGESKLGGSEIV 311
           R+FD  I E+PI F   +  +S++  S IV
Sbjct: 479 RKFDVDINEIPIRFEGPMVNKSRINTSRIV 508


>Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA
           hairpin-binding protein protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 743 SWDTA-SFWKFYYYNGCGFEPSSKVHS 666
           SWDT    WK   Y  CG EPS  V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285


>AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone
           stem-loop binding proteinCDL-1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 743 SWDTA-SFWKFYYYNGCGFEPSSKVHS 666
           SWDT    WK   Y  CG EPS  V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,477,733
Number of Sequences: 27780
Number of extensions: 391077
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)