Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i20
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    28   0.13 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   8.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -2

Query: 313 IHLPDKNKTSERDMLIRRFYIINRDNNGSIYATGKIRNVPLDMQRMSVED-FDRLFEMDK 137
           +HLP  NK +    + R    +NR N   +    +I  +   M RM   D  DR+  MD+
Sbjct: 361 MHLPQSNKMNRMHRMNR----VNRVNR--MDRMDRIDRMDR-MDRMDTMDTMDRIDRMDR 413

Query: 136 IDGPSEEIKMYMMGTIDGVKYGKEMQMTD 50
           +D      +M+ M T+D +    +M   D
Sbjct: 414 MDRIDRIDRMHTMDTMDTMDRTDKMSSMD 442



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 187 MQRMSVED-FDRLFEMDKIDGPSEEIKMYMMGTIDGVKYGKEMQMTDMNNKKITEKPYSL 11
           M RM   D  DR+  MD+ D  S   +M  +  +D +     M   +  N+++ E   +L
Sbjct: 489 MDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTNRMDRMNRMNRQMNEYMMAL 548

Query: 10  A 8
           +
Sbjct: 549 S 549


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 451 LWFQSRKTKIRRACPAL 501
           +WFQ+R+TK ++  P L
Sbjct: 54  IWFQNRRTKWKKQNPGL 70


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 528 PLAGSNTTIFLSGSGYNLSSHSCKLFKLASRQNS 629
           P+ GS  +   SGS  NLSS S      ASR+N+
Sbjct: 594 PINGSGASG--SGSAENLSSGSNNQTSSASRENT 625


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 503 WTDGVRSLAVGRLQHHD 553
           WTDG+  +A+  +  HD
Sbjct: 371 WTDGIFGMALSPVDIHD 387


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 348 LCKCLCKMLPNIL 386
           +CKC CK   N L
Sbjct: 77  ICKCFCKRRTNTL 89


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 348 LCKCLCKMLPNIL 386
           +CKC CK   N L
Sbjct: 525 ICKCFCKRRTNTL 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,179
Number of Sequences: 438
Number of extensions: 6300
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)