Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i14
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   3.3  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   5.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   5.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   7.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.5  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   10.0 
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   10.0 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   10.0 

>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +1

Query: 223 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI-------FCATRHFVRHTTLFTL 381
           FT  FLS +G SNT+ V+ + L    AD  ++R + +       F   R  + +TT   L
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLAL 206

Query: 382 N*DD 393
             DD
Sbjct: 207 EDDD 210


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +2

Query: 653 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 814
           DG     +  L+A  P  +      D  LG+       G  V  QACVS YR  ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 818 FPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 705
           +P      C  +  LET   +RLR K      +DRI+S
Sbjct: 515 YPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 163  LQHIAPSITL*FFKYVL*MYFTSRFLSA 246
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -2

Query: 179  GAMCC----NGDCLAVVVLDRNQLQNTDMEVLESLEYTSDNVELLCKKVCV 39
            G  CC    NG  L    L R   +N+D  +L S  YT  N E L K + +
Sbjct: 2404 GFYCCVVNVNGKILVKDKLSRIYNENSDENILCSCFYTGANSEWLHKNLFI 2454


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 28   LSTITHTFLHNNSTLSLVYSKLSNTSMSVFC 120
            L T+THT  HN   L    S L  T   ++C
Sbjct: 4029 LPTMTHTLPHNRFRLFFFLSWLHATLAEIYC 4059


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 137 LDRNQLQNTDMEVLESLEYTSDNVE 63
           +D N  +++D++    LEYT+DN E
Sbjct: 8   IDPNSSEDSDIQEDAELEYTADNPE 32


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -2

Query: 758 LRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTV 579
           L  R K       ++ L S  P+R  K +  +KNHP         +  + L  A P +T 
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479

Query: 578 T 576
           T
Sbjct: 480 T 480


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 100 CWKV*NTLVTTLNCYAKKY 44
           CWK   T+V  L  Y KKY
Sbjct: 491 CWKSAKTIVQLLKIYFKKY 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,575,293
Number of Sequences: 5004
Number of extensions: 76544
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)