Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11i12
(214 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 24 2.4
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 2.4
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 24 3.1
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 23 5.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 7.3
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 23 7.3
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 23 7.3
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 23 7.3
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 22 9.6
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 22 9.6
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar... 22 9.6
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 75 RWLFGTNRRRQNHVTFY 25
RWLF + +RRQ + + Y
Sbjct: 329 RWLFSSGKRRQKYESSY 345
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 176 MKTDAQSTSNTHNFMYSPDNNLEVV 102
M ST+N+ +F+ SP NN +++
Sbjct: 451 MSLQLPSTANSISFLSSPPNNNDII 475
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 96 NDDHLQIVVGRIHEVVRVRCRLGVRFHN 179
N DH+ +V G + R++ L +FHN
Sbjct: 435 NADHIILVHGEQTNMGRLKSALASKFHN 462
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 101 IITNSDGDHDGYLELTAAAKIMS 33
+I N G H GY+ A+ I+S
Sbjct: 101 VILNQQGQHLGYIAEQGASSILS 123
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 162 PVDIEHAQLHVFSRQ 118
P D E+A HVFSRQ
Sbjct: 963 PPDTENAVDHVFSRQ 977
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -2
Query: 174 ENGRPVDIEHAQLHVFSRQQSGGGHHYQFG 85
EN R ++ H GGG YQFG
Sbjct: 304 ENFRKGEVAHTLGWPMRNDTYGGGFMYQFG 333
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 170 TDAQSTSNTHNFMYSPDNNLEVVIITNSDG 81
TDA + N+HN + NN + V +++ G
Sbjct: 359 TDASLSPNSHNTSDNEQNNEDYVSVSSLVG 388
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 152 SNTHNFMYSPDNNLEVVIITN 90
S+ F+Y P + L +V+ITN
Sbjct: 51 SDNVRFVYQPLDELYIVLITN 71
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 69 AIVIAVRIGNDDHLQIVVGRIHEVVR 146
AIVI +G D+ +Q ++ ++ E R
Sbjct: 115 AIVIGPGLGRDEWMQEIMAKVIEYAR 140
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = -3
Query: 203 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNS 87
L + ++++ A+ +SNT N P N + + + +S
Sbjct: 232 LKAVENSDVIESSAEDSSNTDNPSTKPSNEMPISPLLSS 270
>SPBC1709.16c |||aromatic ring-opening dioxygenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 285
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 132 VFSRQQSGGGHHYQF 88
VFS GG HYQF
Sbjct: 33 VFSNDSKLGGLHYQF 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 943,411
Number of Sequences: 5004
Number of extensions: 16202
Number of successful extensions: 43
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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