Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i08
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.3  
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.3  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   8.4  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   8.4  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   8.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   8.4  

>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 691 YSIENV*KLA-LSTQILGHELQN-N*SILTAQLYVL*LDMSPIRYMKAFKNKSGSNPVWC 518
           Y+ +N  ++  LS Q++   L N   +  T     L LD SP   +  F N+ G  P WC
Sbjct: 132 YTAQNSSRITGLSNQLMNSTLYNVQVATCTPGFSALLLD-SPT--INVFNNEEGM-PSWC 187

Query: 517 QPI 509
           QPI
Sbjct: 188 QPI 190


>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 691 YSIENV*KLA-LSTQILGHELQN-N*SILTAQLYVL*LDMSPIRYMKAFKNKSGSNPVWC 518
           Y+ +N  ++  LS Q++   L N   +  T     L LD SP   +  F N+ G  P WC
Sbjct: 132 YTAQNSSRITGLSNQLMNSTLYNVQVATCTPGFSALLLD-SPT--INVFNNEEGM-PSWC 187

Query: 517 QPI 509
           QPI
Sbjct: 188 QPI 190


>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 691 YSIENV*KLA-LSTQILGHELQN-N*SILTAQLYVL*LDMSPIRYMKAFKNKSGSNPVWC 518
           Y+ +N  ++  LS Q++   L N   +  T     L LD SP   +  F N+ G  P WC
Sbjct: 133 YTAQNSSRITGLSNQLMNSTLYNVQVATCTPGFSALLLD-SPT--INVFNNEEGM-PSWC 188

Query: 517 QPI 509
           QPI
Sbjct: 189 QPI 191


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 204 SGVP*EYSNNKTNNNYPLRRSSQLLYIRNDQGG 106
           +G+P  Y N ++    P+++SS +  + N  GG
Sbjct: 32  TGLPSSYGNPQSYGTPPVQQSSAMYGVNNSMGG 64


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -1

Query: 518 STDYQERLTS*CRPRVLFYDTRSNGI-ILPIL--SVG*DTFYSAAE 390
           S+DY  R TS      + YDT S+GI I+ +   +V  D+ YSA++
Sbjct: 446 SSDYFARPTSSSMIGAVIYDTSSSGIYIIDVTDQNVSFDSTYSASD 491


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 424 DSIGSIMPFDLVS*NKTRGRHYDVN 498
           +S+G ++P   VS N +RG  YD++
Sbjct: 858 ESLGMLLPVTEVSDNTSRGVEYDIS 882


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 466 NKTRGRHYDVNRSW*SVDTIRDSNQIY 546
           N+ R RHYD   S+  ++  R SN+ Y
Sbjct: 212 NENRRRHYDSYSSYDELERRRSSNESY 238


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 318 WRRIVESEMRTANVTWSDVKEQAQDRVKWRQLVRALCTSGV 196
           + R + S     N+T  +V     D+  W  L+  LCT G+
Sbjct: 487 FERSIVSSSNLQNLTLENVDNTVWDKRHWAILLPRLCTRGL 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,481,807
Number of Sequences: 5004
Number of extensions: 67599
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)