Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i08
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    45   6e-05
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    43   3e-04
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    43   3e-04
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    43   3e-04
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = -3

Query: 444 HYTTYTIRWIGHILQRSGVNAASIAFEWQPLGRRRP-GRPVHTWRRIVESEMRTANVTWS 268
           H     + W GH+ +R+     ++  +W P   +RP GRP   W   +  E+ T +  + 
Sbjct: 117 HIKKRKLGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEVTTRD-AFG 175

Query: 267 DVKE----QAQDRVKWRQLVRA 214
            VK+    QA+DR  W+ ++RA
Sbjct: 176 QVKQLWSTQAKDRKAWKAVIRA 197


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = -3

Query: 420  WIGHILQRSGVNAASIAFEWQPLGRRRP-GRPVHTWRRIVESEMRTAN------VTWSDV 262
            W GH+ +R      ++  EW+P G +RP GRP   W   +  E+ T +        WS +
Sbjct: 814  WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTI 873

Query: 261  KEQAQDRVKWRQLVRALCTS 202
               A+DR +W  ++R   T+
Sbjct: 874  ---AKDRKEWLAVIRRNTTN 890


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = -3

Query: 420  WIGHILQRSGVNAASIAFEWQPLGRRRP-GRPVHTWRRIVESEMRTAN------VTWSDV 262
            W GH+ +R      ++  EW+P G +RP GRP   W   +  E+ T +        WS +
Sbjct: 989  WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTI 1048

Query: 261  KEQAQDRVKWRQLVRALCTS 202
               A+DR +W  ++R   T+
Sbjct: 1049 ---AKDRKQWLAVIRRNTTN 1065


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = -3

Query: 420 WIGHILQRSGVNAASIAFEWQPLGRRRP-GRPVHTWRRIVESEMRTAN------VTWSDV 262
           W GH+ +R      ++  EW+P G +RP GRP   W   +  E+ T +        WS +
Sbjct: 728 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTI 787

Query: 261 KEQAQDRVKWRQLVRALCTS 202
              A+DR +W  ++R   T+
Sbjct: 788 ---AKDRKQWLAVIRRNTTN 804


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
 Frame = -3

Query: 420 WIGHILQRSGVNAASIAFEWQPLGRRRP-GRPVHTWRRIVESEMRTAN------VTWSDV 262
           W GH+ +R      ++  EW+P G +RP GRP   W   +  E+ T +        WS +
Sbjct: 340 WAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTI 399

Query: 261 KEQAQDRVKWRQLVRALCTS 202
              A+DR +W  ++R   T+
Sbjct: 400 ---AKDRKEWLAVIRRNTTN 416


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 357 PLGRRRPGRPVHTWRRIVESEMRTANVTWSDVKEQAQ 247
           P    R GRP  T  R+V   + ++ ++W D+K+Q +
Sbjct: 115 PRRESRYGRPYSTRHRVVVENL-SSRISWQDLKDQVR 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,261,309
Number of Sequences: 27780
Number of extensions: 386088
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)