Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11i07
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 255 2e-68
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 66 1e-11
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 4.5
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 28 6.0
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 28 6.0
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 28 6.0
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 28 6.0
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 28 6.0
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 28 6.0
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 28 6.0
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 28 6.0
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 255 bits (624), Expect = 2e-68
Identities = 114/158 (72%), Positives = 142/158 (89%)
Frame = -2
Query: 478 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 299
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 298 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 119
+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ ++ IA+IMR RS
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 118 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 5
MA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANG 158
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/43 (67%), Positives = 37/43 (86%)
Frame = -2
Query: 133 MRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 5
MR RSMA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANG 43
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 57 HPTDCAVPRISFTEPERYRAIDL 125
HPT CAV F +P +Y IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 198 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 37
SR +S TTA S L TD+ + A KR+ A +DVLWR +
Sbjct: 94 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 147
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 198 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 37
SR +S TTA S L TD+ + A KR+ A +DVLWR +
Sbjct: 35 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 88
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 358 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 188
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 187 IKHNGNISLEDVVGIAKIMRNRSM 116
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 358 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 188
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 187 IKHNGNISLEDVVGIAKIMRNRSM 116
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 358 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 188
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 187 IKHNGNISLEDVVGIAKIMRNRSM 116
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 358 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 188
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 187 IKHNGNISLEDVVGIAKIMRNRSM 116
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 358 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 188
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 187 IKHNGNISLEDVVGIAKIMRNRSM 116
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 358 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 188
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 187 IKHNGNISLEDVVGIAKIMRNRSM 116
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 305 DLETLPVTCGLGNVITHLFRRQTKRTDFR 391
D ++LP+ C LG V+ + ++ TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,146
Number of Sequences: 27780
Number of extensions: 310106
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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