Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11i06
(251 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 0.66
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 0.88
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 24 2.7
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 3.5
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 4.7
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 4.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 23 6.2
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 23 6.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 23 6.2
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 23 6.2
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 23 8.2
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 23 8.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 23 8.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 23 8.2
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 23 8.2
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 8.2
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 0.66
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 209 NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 78
+ S + N++N+ + + P+ TN++ D + + S KSK
Sbjct: 53 STSSYSGNHHNINIQHHPNRPFRTNSSSFSPNDYSISESPSKSK 96
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 0.88
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -1
Query: 251 DTMERYHPYQRAPWNASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKAR 72
DT Y Q +S NY NVK+ + A + + TTNA +P K
Sbjct: 47 DTTSTYEGAQPLSSQSSR-SSNYTNVKITATQNNVDALTGAPIRIVTTTNARIQPDEKTL 105
Query: 71 RRL 63
+ L
Sbjct: 106 QDL 108
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 24.2 bits (50), Expect = 2.7
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = +3
Query: 105 CCVSHFDVCI 134
CC+ H+D+CI
Sbjct: 155 CCLKHYDLCI 164
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 23.8 bits (49), Expect = 3.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 173 KVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDF 57
K+A ++ +++N + + S P SKAR+ DF
Sbjct: 4 KIADLLQELQSSSNVTSNQLENVDKSSIPLSKARKPSDF 42
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 134 NADVEMTDTTNAPSRPKSKARRRLDFTN 51
+AD M D + + R KSK ++ + FT+
Sbjct: 213 DADHAMIDESRSTQRRKSKPKKHVAFTD 240
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 23.4 bits (48), Expect = 4.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 1 KVLQNCRRQYNTACGAMLVKSNL 69
K+LQ+C R+ N + G + V+ NL
Sbjct: 134 KILQDCLRRPNISNGGIWVQWNL 156
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 23.0 bits (47), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 236 YHPYQRAPWNASIFKKNYN 180
Y P+ RA NASI KN++
Sbjct: 502 YRPFLRANDNASINNKNHH 520
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 23.0 bits (47), Expect = 6.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 131 ADVEMTDTTNAPSRPKSKARRRLDFTN 51
++++ T T++A S+P ++ R FTN
Sbjct: 438 SNMDETGTSSAGSKPFNRKSRNRSFTN 464
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 23.0 bits (47), Expect = 6.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 230 PYQRAPWNASIFKKNYNNVKVASYIEVPYTTNN 132
P A W+ SI+ N +++VPY T N
Sbjct: 1152 PLSLATWSKSIYINREGN-----FLDVPYNTRN 1179
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 23.0 bits (47), Expect = 6.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 85 NLKQGED*ILPTWRRRPCCIDDGNFAKP 2
+L++ ED W + CC NF P
Sbjct: 816 HLREAEDDEAAMWAAKECCESVNNFNVP 843
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 22.6 bits (46), Expect = 8.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 69 KIRFYQHGAAGRVVLTTAILQNL 1
KI F QH R+VL TA++ L
Sbjct: 146 KILFMQHFQDSRLVLYTAVMSFL 168
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 167 ASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDF 57
++YI+ + + +D+E + + KSKA+ +DF
Sbjct: 589 STYIDDSSSNSPSDIESNYSADDNEISKSKAQNAIDF 625
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 22.6 bits (46), Expect = 8.2
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -1
Query: 200 IFKKNY-NNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDFTN 51
I K+Y + K SY + P + N D D + S P+S DF +
Sbjct: 147 ISPKSYLTSSKTFSYPKAPTESTNGDYLDEDYVDGQSDPESSNASDSDFAD 197
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 22.6 bits (46), Expect = 8.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Frame = -1
Query: 242 ERYHPYQRAPWNASIFKKNYNN 177
ER+H WN + +K Y +
Sbjct: 485 ERFHRLPEVQWNRAFYKTYYES 506
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 22.6 bits (46), Expect = 8.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 209 NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPS 93
N S +YN + V E Y+T+N + D + P+
Sbjct: 422 NPSTLDDDYNYMFVCPPEEYTYSTDNVRTDSLDLQSLPT 460
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 215 PWNASIFKKNYNNVKVASYIEVPYTTNN 132
P N +K+N N +V+S+ Y+T N
Sbjct: 221 PLNGVNYKQNTTNNRVSSFQNSQYSTLN 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,046,386
Number of Sequences: 5004
Number of extensions: 18198
Number of successful extensions: 44
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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