Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i06
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0717 + 35702592-35703152,35703789-35704121                       28   0.91 
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    27   1.6  
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993     26   4.8  
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570...    26   4.8  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    25   6.4  
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582...    25   6.4  
12_02_0408 + 18659494-18660362,18660472-18660634,18660976-186611...    25   8.4  
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51...    25   8.4  

>03_06_0717 + 35702592-35703152,35703789-35704121
          Length = 297

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 69  SPCFRFWARGRICCVSHFDVCIICCVRYFNV 161
           S C R W RGR+   SHF      C+R  +V
Sbjct: 114 SECKRGWLRGRVTHSSHFWASTSACLRRSHV 144


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 251 DTMERYHPYQRAPWNASIF--KKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 78
           DTM+ Y   Q +      F  +K+ N    A+ ++    T+N  V  +++ +  ++PK  
Sbjct: 590 DTMDAYKTEQTSEMEGKKFMARKSCNPAFAAAQLKFEELTSNLTVSRSNSLDGANKPKVH 649

Query: 77  ARRRLDFTNMAPQ 39
             R  D  N++P+
Sbjct: 650 TPRSQD--NVSPK 660


>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
          Length = 1125

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 199 YLKKIIIMLKSLHTLKYLTQQIMQTSK*LTQQMRPLAQ 86
           +LKKI   L+SL  LKYL  +  + +K L Q+++ L Q
Sbjct: 689 HLKKICEQLESLRLLKYLGLKGTRITK-LPQEIQKLKQ 725


>06_02_0085 +
           11555539-11555632,11555767-11555867,11556947-11557056,
           11557152-11557227,11557412-11557555,11558432-11558503,
           11558601-11559470
          Length = 488

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -1

Query: 233 HPYQRAPWNASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPK 84
           H Y  AP+ ++ +  N  +   ++Y   PYT    D   +D+ N  S  K
Sbjct: 277 HGYSSAPYTSTDYPTNEVHKPPSNYSSPPYT--RTDYPSSDSYNPQSNDK 324


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 235 IIRINERRGTHQYLKKIIIMLKSLHTLKYLTQQIMQTSK 119
           ++ +      + Y K I+  L +LH L+YL  Q ++TS+
Sbjct: 595 VLALENHFSRNYYCKHILQHLGNLHHLRYLGLQNVRTSE 633


>04_03_0052 +
           10257109-10257337,10257580-10257668,10257708-10258289,
           10258477-10258668,10259392-10259563,10260190-10260461,
           10260682-10260801,10260912-10260968,10261631-10261831,
           10262451-10262511,10262712-10263013
          Length = 758

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 158 IEVPYTTNNADVEMTDTTNAPSRPKSKARRR 66
           +  P TTN  D +   T+   +RP +K R R
Sbjct: 544 VHTPETTNEIDPKSVITSEKENRPPTKQRLR 574


>12_02_0408 +
           18659494-18660362,18660472-18660634,18660976-18661139,
           18661253-18661511,18661605-18661712
          Length = 520

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 101 APSRPKSKARRRLDFTNMAPQAVLY 27
           APSRP S  RRR+D     P + L+
Sbjct: 93  APSRPFSLERRRVDAPPPTPPSSLF 117


>02_01_0073 -
           509377-509425,510200-510270,510420-510539,510684-510769,
           510843-510915,510996-511718,513752-514081,514124-514210,
           514494-515250,515336-515399,515477-515609,515702-515801,
           515952-516088,516195-516341,516428-516478,517083-517148
          Length = 997

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 99  RICCVSHFDVCIICC 143
           R C   H+D+C+ CC
Sbjct: 245 RSCKSGHYDLCLSCC 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,658
Number of Sequences: 37544
Number of extensions: 109359
Number of successful extensions: 301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)