Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i06
         (251 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    27   1.8  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    27   1.8  
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily ass...    26   4.1  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    26   4.1  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    26   4.1  
Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z81124-9|CAB03379.2|  328|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical p...    25   9.4  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    25   9.4  

>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 143 TTNNADVEMTDTTNAPSRPKSKARR 69
           TTN+ D E +DT N    P+S+ARR
Sbjct: 378 TTNSEDTEKSDTNN--KTPESQARR 400


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 143 TTNNADVEMTDTTNAPSRPKSKARR 69
           TTN+ D E +DT N    P+S+ARR
Sbjct: 472 TTNSEDTEKSDTNN--KTPESQARR 494


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +3

Query: 24  SIQHGLR---RHVGKI*SSPCFRFWARGR 101
           S+++G R   R +G +   PC  FWARGR
Sbjct: 131 SMEYGHRMWGRAIGIVFLIPCAYFWARGR 159


>U64601-3|ABC71817.1|  485|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform c protein.
          Length = 485

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 3   GFAKLPSSIQHGLRRHVGKI*SSPCFRFWARGRI--CCVSHFDVCIICCVRYFNV 161
           G   +P S+   L  H   +    C R WA   +  C  S  ++C+I   RYF +
Sbjct: 42  GLIVMPMSLLDLLHNHRWPLGRFLC-RMWATSDVLLCTASILNLCVISLDRYFAI 95


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 3   GFAKLPSSIQHGLRRHVGKI*SSPCFRFWARGRI--CCVSHFDVCIICCVRYFNV 161
           G   +P S+   L  H   +    C R WA   +  C  S  ++C+I   RYF +
Sbjct: 149 GLIVMPMSLLDLLHNHRWPLGRFLC-RMWATSDVLLCTASILNLCVISLDRYFAI 202


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 3   GFAKLPSSIQHGLRRHVGKI*SSPCFRFWARGRI--CCVSHFDVCIICCVRYFNV 161
           G   +P S+   L  H   +    C R WA   +  C  S  ++C+I   RYF +
Sbjct: 121 GLIVMPMSLLDLLHNHRWPLGRFLC-RMWATSDVLLCTASILNLCVISLDRYFAI 174


>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 217 RRGTHQYLKKIIIMLKSLHTLKYLTQQI 134
           R G +  +KK +I   +LH L   T QI
Sbjct: 230 RHGVYNQIKKFLIFYSALHFLVLYTYQI 257


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 251 DTMERYHPYQRAPWNASIFKKNYNNVKVASYI 156
           D  E   P++   WN  ++K+N N  +   Y+
Sbjct: 246 DLRESREPHESG-WNLDVWKRNLNECRKGQYL 276


>Z81124-9|CAB03379.2|  328|Caenorhabditis elegans Hypothetical
           protein T21B4.12 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  RICCVSHFDVCIIC 140
           +ICC + F  CI+C
Sbjct: 56  KICCFNSFGSCIVC 69


>U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical
           protein T12A2.2 protein.
          Length = 757

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 161 YIEVPYTTNNADVEMTDTTNAPSRPKSKA 75
           YIE  YTT N  V +      P+RP  K+
Sbjct: 698 YIEEAYTTENWLVRIYKRKKLPNRPTVKS 726


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 131  ADVEMTDTTNAPSRPKSKARRR 66
            +D + +D+ +AP+ P+S ARR+
Sbjct: 1458 SDEDDSDSDDAPAAPRSAARRK 1479


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 131  ADVEMTDTTNAPSRPKSKARRR 66
            +D + +D+ +AP+ P+S ARR+
Sbjct: 1414 SDEDDSDSDDAPAAPRSAARRK 1435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,783,560
Number of Sequences: 27780
Number of extensions: 103053
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)