Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i06
         (251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   2.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   7.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   9.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   9.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   9.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   9.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   9.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 2.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 212 WNASIFKKNYNNVKVASYIE 153
           W A   K    N KV SYI+
Sbjct: 371 WGAECGKYPNGNTKVGSYID 390


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  CW*NLIFSLL*IL 88
           CW  +++SLL I+
Sbjct: 92  CWITMVYSLLGII 104


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 235 IIRINERRGTHQYLKKIIIMLKSLHTLKY 149
           I+RIN  R  +  LKK I +  S   +++
Sbjct: 112 ILRINRNRCQYCRLKKCIAVGMSRDAVRF 140


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -1

Query: 233 HPYQRAPWNA 204
           HPY    WN+
Sbjct: 466 HPYDHLVWNS 475


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 244 WRDIIRINER 215
           W+DI+ +NE+
Sbjct: 342 WKDIMLLNEK 351


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 244 WRDIIRINER 215
           W+DI+ +NE+
Sbjct: 342 WKDIMLLNEK 351


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 244 WRDIIRINER 215
           W+DI+ +NE+
Sbjct: 342 WKDIMLLNEK 351


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 243 GEISSVSTSAVERINI 196
           GEI  V  SA++ IN+
Sbjct: 281 GEIQCVKISALKGINL 296


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 4   VLQNCRRQYNTACGAM 51
           +LQN   Q+++ CG +
Sbjct: 515 MLQNLYEQFDSFCGQL 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,505
Number of Sequences: 438
Number of extensions: 1141
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)