Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i02
         (889 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    36   0.20 
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    31   5.6  
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    31   7.4  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 35.9 bits (79), Expect = 0.20
 Identities = 17/57 (29%), Positives = 33/57 (57%)
 Frame = +3

Query: 330 VYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTVYCTHSYIILNI 500
           +Y++IY    +YL I+  +F+  +L +  Y+ +    YL++ L+    T+ YI L+I
Sbjct: 23  IYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIF--TYIYIYLHI 77



 Score = 35.1 bits (77), Expect = 0.34
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 324 KKVYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTVYCTHSYIILNI 500
           +K+Y++IY    +Y+ IFI +F   ++ V  Y+ +   +Y+F  ++     + YI L I
Sbjct: 3   EKLYVYIYMF--MYIFIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYI 59



 Score = 33.1 bits (72), Expect = 1.4
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +3

Query: 330 VYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFT-VYC-THSYIILNI 500
           +Y+++Y    LY+  +I  +   ++ +  Y+ +    Y++L +FT +Y   H +I L+I
Sbjct: 25  IYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHI 83



 Score = 32.7 bits (71), Expect = 1.8
 Identities = 12/66 (18%), Positives = 32/66 (48%)
 Frame = +3

Query: 330 VYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTVYCTHSYIILNI*FC 509
           +Y+ +Y    +Y+ I+I ++   ++ +  Y  +    YL++ ++   C + Y+ + +   
Sbjct: 9   IYMFMYIFIFIYIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIF 68

Query: 510 TVFVSY 527
           T    Y
Sbjct: 69  TYIYIY 74



 Score = 31.5 bits (68), Expect = 4.2
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +3

Query: 330 VYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTVYCTHSYIILNI*FC 509
           +Y++ Y  + +YL IFI ++   ++ +  Y+ +    Y++L +F       YI + + + 
Sbjct: 35  LYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHIFIYICICL-YI 93

Query: 510 TVFVSYSIN 536
            ++V   IN
Sbjct: 94  FIYVFIYIN 102


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 315 IHTKKVYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYY--LFLILFTVYCTHSYI 488
           +HT  +Y+H+Y     +  I  +++   +  +  Y  M    Y  ++   +   CTH+YI
Sbjct: 189 VHTH-IYIHMYVCVCTHAYIHTHVYVCVYTRIYTYTCMCVCVYTRIYTYTYVCVCTHAYI 247

Query: 489 ILNI*FCTVFVSY 527
              +  C    +Y
Sbjct: 248 HTQVYVCVCTHAY 260



 Score = 30.3 bits (65), Expect = 9.8
 Identities = 16/80 (20%), Positives = 36/80 (45%)
 Frame = +3

Query: 288 CNEIYIR*RIHTKKVYLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTV 467
           C   YI   ++   VY  IY  + + + ++  +++  ++ V  +       Y+   ++  
Sbjct: 202 CTHAYIHTHVYVC-VYTRIYTYTCMCVCVYTRIYTYTYVCVCTHA------YIHTQVYVC 254

Query: 468 YCTHSYIILNI*FCTVFVSY 527
            CTH+YI  ++  C    +Y
Sbjct: 255 VCTHAYIHTHVCVCVYTYTY 274


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +3

Query: 744 AFFYLVICICVQWLV*LAVWXXXXXXXXXXXX-SVC*CVCXCXC 872
           A  ++ IC+CV   V L VW              +C CVC C C
Sbjct: 217 ACVWVHICVCVPVCVCLCVWVHICVCVCLCVWVHICVCVCACVC 260


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,014,227
Number of Sequences: 237096
Number of extensions: 1152803
Number of successful extensions: 9537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9498
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)