Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11i02
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    32   0.48 
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z66520-9|CAA91390.2|  335|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    31   1.5  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +3

Query: 3   IATIFLNLNFLTVQFYNV--MSTAYYLFLILFTVSCL 107
           +AT+FLNL F+ +  ++   + T Y   LI+F++ CL
Sbjct: 19  VATVFLNLTFIFLTIFHTKRIDTTYKELLIVFSILCL 55


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 333 YLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTVYCTHSYIILN 497
           Y   Y  +I Y+S     FSL   T+QYY+    +  L  +LFT  C  +YI +N
Sbjct: 54  YAGYYGQAIQYISFAF--FSLFTATIQYYISSKSMLVLSSVLFTT-CYIAYIHVN 105


>Z66520-9|CAA91390.2|  335|Caenorhabditis elegans Hypothetical
           protein F49E12.5a protein.
          Length = 335

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +3

Query: 339 HIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILF----TVYCTHSYIILNI*F 506
           HI+    LYL++F  +F +  +   Y  ++ +  Y F+  F    ++ CT +  I++I  
Sbjct: 192 HIFLDVTLYLAVFNFVFDIGLMYYSYQEILWKRSYSFVNRFQSRISLKCTQAIFIISICQ 251

Query: 507 CTVFVSYS 530
           C   V YS
Sbjct: 252 CISNVLYS 259


>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 333 YLHIYKLSILYLSIFINMFSLNFLTVQYYVVMSRVYYLFLILFTVY 470
           +L +Y+L+ L L +F+  F     TV+ ++  SRV  + L+ F +Y
Sbjct: 244 FLFLYELTGLLLRVFVKDFLALSETVRRFIFYSRVSTISLLCFLLY 289


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 393 LNFLTVQYYVVMSRVYYLFLILFTVYCTHSYII 491
           +  LT+  YV  +R +Y FL  + V+C  S  I
Sbjct: 156 IGMLTIPVYVCFNRSWYRFLATWLVFCIFSAFI 188


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 3   IATIFL-NLNFLTVQFYNVMSTAYYL---FLILF 92
           +A IFL NLNF  + FY V S  +YL   F +LF
Sbjct: 157 LALIFLINLNFNVISFYMVNSLIFYLAITFSLLF 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,176
Number of Sequences: 27780
Number of extensions: 208756
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)