Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h18
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   4.5  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.0  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 165 STQSVPAINRSHFPSVLSRS 224
           ST S+P+IN   FPS LS S
Sbjct: 336 STTSIPSINNQPFPSGLSAS 355


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 693 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 848
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 83  TNNNSLLSKSLTKFHSSLTKLKFRLCMIDTISPRHQSVALPIRPFAFSVFI 235
           TN  S  S  LT F S ++ +K +   I+ I   + S+ + IRP   +VFI
Sbjct: 99  TNELSTWSYGLTPFFS-ISSIKTKHDYINIIKKHYVSLGVGIRPCFQAVFI 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,181
Number of Sequences: 5004
Number of extensions: 63107
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)