Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h18
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584...    30   2.1  
12_01_0670 + 5698852-5699061,5700894-5701316                           29   4.8  
12_01_0454 + 3580332-3581714                                           29   4.8  
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   4.8  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   8.3  

>05_02_0033 +
           5847754-5847982,5848308-5848437,5849038-5849116,
           5849194-5849251,5849732-5850795,5850899-5851003,
           5851369-5851473
          Length = 589

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 381 NYTKLTNGTFVKLNRKLRFGDQS*GVKWVTLDWSTQCFGVV 259
           +YT+L   T V  N +L    QS G + V LDW+  C G V
Sbjct: 549 SYTELL--TSVSDNYQLALNKQSSGQRGVGLDWTVDCLGYV 587


>12_01_0670 + 5698852-5699061,5700894-5701316
          Length = 210

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 427 RHSKVALLIPQSSAAQLHETDERHFCKI 344
           +H++VALL+P SS+A   + D    C I
Sbjct: 41  KHTRVALLLPSSSSAAAGDDDHHPTCDI 68


>12_01_0454 + 3580332-3581714
          Length = 460

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -3

Query: 534 LMIDKYTFNKPCKTGYTWACSGRTSQACKAKLIIHGDTVKSHCLSHNHPPP 382
           +M D  T  K C     W CS  TS + K KL  H    + H  +   PPP
Sbjct: 326 VMADLKTHEKHCGRD-RWLCSCGTSFSRKDKLFAHVALFQGHAPALPPPPP 375


>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 794 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 696
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 718 IVIPHTLINKLWFHFGSDSIVLIFVW 795
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,036,044
Number of Sequences: 37544
Number of extensions: 412165
Number of successful extensions: 1071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)