Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h18
(860 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ277174-1|CAB85469.1| 473|Drosophila melanogaster mod(mdg4)51.... 38 0.013
AE014297-2986|AAN13867.1| 473|Drosophila melanogaster CG32491-P... 38 0.013
BT029698-1|ABL75755.1| 488|Drosophila melanogaster IP17441p pro... 34 0.22
AJ586732-1|CAE52501.1| 103|Drosophila melanogaster Mod(mdg4)-53... 34 0.22
BT003579-1|AAO39583.1| 539|Drosophila melanogaster LD27582p pro... 33 0.50
AJ320165-1|CAC51388.1| 154|Drosophila melanogaster mod(mdg4)58.... 33 0.50
AE014297-2987|AAN13868.1| 539|Drosophila melanogaster CG32491-P... 33 0.50
AJ586734-1|CAE52503.1| 121|Drosophila melanogaster Mod(mdg4)-55... 32 1.2
BT030425-1|ABO52845.1| 684|Drosophila melanogaster IP17768p pro... 30 4.7
AE013599-3365|AAF46824.2| 631|Drosophila melanogaster CG30277-P... 30 4.7
AY069561-1|AAL39706.1| 764|Drosophila melanogaster LD29352p pro... 29 8.2
AE014298-2121|AAN09659.2| 731|Drosophila melanogaster CG5877-PB... 29 8.2
AE014298-2120|AAF48437.1| 984|Drosophila melanogaster CG5877-PA... 29 8.2
>AJ277174-1|CAB85469.1| 473|Drosophila melanogaster mod(mdg4)51.4
protein.
Length = 473
Score = 38.3 bits (85), Expect = 0.013
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 561 ITTDRGKSLLMIDKYTFNKPCKTGYT--WACSGRTSQACKAKLIIHGD-TVKSHCLSHNH 391
IT RG L I +++F + +G W+C+ CKA+++ D V C HNH
Sbjct: 411 ITGFRGSRKLKIGEFSFTRNKTSGLKTYWSCARAGVHKCKARVVTAQDHDVTIKCGQHNH 470
Query: 390 PP 385
PP
Sbjct: 471 PP 472
>AE014297-2986|AAN13867.1| 473|Drosophila melanogaster CG32491-PJ,
isoform J protein.
Length = 473
Score = 38.3 bits (85), Expect = 0.013
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 561 ITTDRGKSLLMIDKYTFNKPCKTGYT--WACSGRTSQACKAKLIIHGD-TVKSHCLSHNH 391
IT RG L I +++F + +G W+C+ CKA+++ D V C HNH
Sbjct: 411 ITGFRGSRKLKIGEFSFTRNKTSGLKTYWSCARAGVHKCKARVVTAQDHDVTIKCGQHNH 470
Query: 390 PP 385
PP
Sbjct: 471 PP 472
>BT029698-1|ABL75755.1| 488|Drosophila melanogaster IP17441p
protein.
Length = 488
Score = 34.3 bits (75), Expect = 0.22
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 552 DRGKSLLMIDKYTFN----KPCKTGYTWACSGRTSQACKAKLIIHGDTVKSHCLSHNHPP 385
DRGK L+ + +TF+ P K W CS C + L H ++KS HNH P
Sbjct: 408 DRGK--LVHEGFTFSCYSRNPGKCLAFWRCSMYKKMHCTSALTTHIKSIKSIRGFHNHKP 465
Query: 384 PNYTK 370
P K
Sbjct: 466 PERLK 470
>AJ586732-1|CAE52501.1| 103|Drosophila melanogaster Mod(mdg4)-53.5
protein.
Length = 103
Score = 34.3 bits (75), Expect = 0.22
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 552 DRGKSLLMIDKYTFN----KPCKTGYTWACSGRTSQACKAKLIIHGDTVKSHCLSHNHPP 385
DRGK L+ + +TF+ P K W CS C + L H ++KS HNH P
Sbjct: 23 DRGK--LVHEGFTFSCYSRNPGKCLAFWRCSMYKKMHCTSALTTHIKSIKSIRGFHNHKP 80
Query: 384 PNYTK 370
P K
Sbjct: 81 PERLK 85
>BT003579-1|AAO39583.1| 539|Drosophila melanogaster LD27582p
protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.50
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 561 ITTDRGKSLLMIDKYTFNKP-CKTGYT-WACSGRTSQACKAKLIIHGDTVKSHCLSHNH 391
I + G +M+ ++TFN+ C+ T W CS C+A+L DT+ HNH
Sbjct: 437 IVSKYGTKQIMLKQHTFNRHICRDDVTYWRCSQFAVLRCRARLKTKLDTLTILNSEHNH 495
>AJ320165-1|CAC51388.1| 154|Drosophila melanogaster mod(mdg4)58.8
protein protein.
Length = 154
Score = 33.1 bits (72), Expect = 0.50
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 561 ITTDRGKSLLMIDKYTFNKP-CKTGYT-WACSGRTSQACKAKLIIHGDTVKSHCLSHNH 391
I + G +M+ ++TFN+ C+ T W CS C+A+L DT+ HNH
Sbjct: 52 IVSKYGTKQIMLKQHTFNRHICRDDVTYWRCSQFAVLRCRARLKTKLDTLTILNSEHNH 110
>AE014297-2987|AAN13868.1| 539|Drosophila melanogaster CG32491-PP,
isoform P protein.
Length = 539
Score = 33.1 bits (72), Expect = 0.50
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 561 ITTDRGKSLLMIDKYTFNKP-CKTGYT-WACSGRTSQACKAKLIIHGDTVKSHCLSHNH 391
I + G +M+ ++TFN+ C+ T W CS C+A+L DT+ HNH
Sbjct: 437 IVSKYGTKQIMLKQHTFNRHICRDDVTYWRCSQFAVLRCRARLKTKLDTLTILNSEHNH 495
>AJ586734-1|CAE52503.1| 121|Drosophila melanogaster Mod(mdg4)-55.2
protein.
Length = 121
Score = 31.9 bits (69), Expect = 1.2
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = -3
Query: 558 TTDRGKSLLMID--KYTFNKPCKTGYTWACSGRTSQACKAKLI---IHGDTVKSHCLSHN 394
TT RG+ +L+ + +Y N+ W CS +C+A L+ + T++ H
Sbjct: 40 TTQRGRVMLVYEGYRYVVNRQSLKNVFWRCSRYVKHSCRATLVTSKVQEVTLRIAGTPHT 99
Query: 393 HPP 385
H P
Sbjct: 100 HAP 102
>BT030425-1|ABO52845.1| 684|Drosophila melanogaster IP17768p
protein.
Length = 684
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 286 LVHSVFWGCVCVGSNSVNKHAERE-RTDGKC 197
L +++ GC C+GS+S+N E + DG C
Sbjct: 502 LGRTIYTGCECLGSSSLNSEPESQFAVDGTC 532
>AE013599-3365|AAF46824.2| 631|Drosophila melanogaster CG30277-PA
protein.
Length = 631
Score = 29.9 bits (64), Expect = 4.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 286 LVHSVFWGCVCVGSNSVNKHAERE-RTDGKC 197
L +++ GC C+GS+S+N E + DG C
Sbjct: 502 LGRTIYTGCECLGSSSLNSEPESQFAVDGTC 532
>AY069561-1|AAL39706.1| 764|Drosophila melanogaster LD29352p
protein.
Length = 764
Score = 29.1 bits (62), Expect = 8.2
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -1
Query: 848 IHWKQVPLVLQKTNL*RYQTKMRTMLSLPK--WNQSLLMRVCGMTMKMARTMTKLITERT 675
I+W+ + L KTN ++K ++++ + W++SLLM + ++ L+TE+
Sbjct: 689 IYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKE 748
Query: 674 ILIW 663
I I+
Sbjct: 749 IRIF 752
>AE014298-2121|AAN09659.2| 731|Drosophila melanogaster CG5877-PB,
isoform B protein.
Length = 731
Score = 29.1 bits (62), Expect = 8.2
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -1
Query: 848 IHWKQVPLVLQKTNL*RYQTKMRTMLSLPK--WNQSLLMRVCGMTMKMARTMTKLITERT 675
I+W+ + L KTN ++K ++++ + W++SLLM + ++ L+TE+
Sbjct: 656 IYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKE 715
Query: 674 ILIW 663
I I+
Sbjct: 716 IRIF 719
>AE014298-2120|AAF48437.1| 984|Drosophila melanogaster CG5877-PA,
isoform A protein.
Length = 984
Score = 29.1 bits (62), Expect = 8.2
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -1
Query: 848 IHWKQVPLVLQKTNL*RYQTKMRTMLSLPK--WNQSLLMRVCGMTMKMARTMTKLITERT 675
I+W+ + L KTN ++K ++++ + W++SLLM + ++ L+TE+
Sbjct: 909 IYWRLYMIALSKTNASFRRSKEVLIMAMDECPWDKSLLMEGAKVLPVKLASLQDLMTEKE 968
Query: 674 ILIW 663
I I+
Sbjct: 969 IRIF 972
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,418,031
Number of Sequences: 53049
Number of extensions: 714009
Number of successful extensions: 1945
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1943
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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