Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h18
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 619 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 741
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 429 GDTVKSHCLSHNHPPPNYTKLTNGTFVKLN 340
           GDT   HC  H   P   T L  G  ++LN
Sbjct: 822 GDTATLHCEVHGDTPVTVTWLKGGK-IELN 850


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 429 GDTVKSHCLSHNHPPPNYTKLTNGTFVKLN 340
           GDT   HC  H   P   T L  G  ++LN
Sbjct: 818 GDTATLHCEVHGDTPVTVTWLKGGK-IELN 846


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 445 KTHHPRRHSKVALLIPQSSAAQLHETDERHFCKIK*EVAVRRSVIRGQMGHIRLVH 278
           +THHP RH +      QS +  L+   E+    +K E  V   ++   +G + +VH
Sbjct: 79  ETHHPIRHGR-----RQSRSMDLNAHREQMSWPVKKEAVVEGDLV---LGGLMMVH 126


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 524 TNTLSTSRVRPATPG 480
           TN +ST   RPA+PG
Sbjct: 101 TNKMSTRGKRPASPG 115


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 165 STQSVPAINRSHFPSVLSRSAC 230
           S Q   A + SH  S L RSAC
Sbjct: 278 SLQPSLASHHSHLSSALGRSAC 299


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 447 LYRPGTFYPNRPRCSRSYTA 506
           L  PG F P+ P    S+TA
Sbjct: 57  LINPGNFSPSGPNSPGSFTA 76


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 447 LYRPGTFYPNRPRCSRSYTA 506
           L  PG F P+ P    S+TA
Sbjct: 57  LINPGNFSPSGPNSPGSFTA 76


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/55 (20%), Positives = 27/55 (49%)
 Frame = +1

Query: 541 LPSIGRYSFAPYHTLCIADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFVIV 705
           +P +G+Y       + I+ C T    N++  S +  K + +  R+ + ++  ++V
Sbjct: 304 VPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLV 358


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/55 (20%), Positives = 27/55 (49%)
 Frame = +1

Query: 541 LPSIGRYSFAPYHTLCIADCSTFTSRNINISSCRAIKTSHFHIRIVLSVISFVIV 705
           +P +G+Y       + I+ C T    N++  S +  K + +  R+ + ++  ++V
Sbjct: 304 VPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLV 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,623
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)