Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h16
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 34 0.022
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 30 0.36
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 29 1.1
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.6
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 3.4
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 27 3.4
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 3.4
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 5.9
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 5.9
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 26 5.9
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 5.9
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 26 5.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 7.8
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 34.3 bits (75), Expect = 0.022
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = -2
Query: 692 YSLNSTSSTEYKISDVVMTMIFLLRSEKYHSLFKL--LETTFDDYTCRPQMTQVQTDTLL 519
YSL + ++ + + L E Y L L LE D C P + Q DT+L
Sbjct: 1089 YSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVD---CSPSIIDEQVDTIL 1145
Query: 518 DAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 429
+A+R ++E+ T L T +D++RS+ F
Sbjct: 1146 EALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 235 SSLFKNSESSQNGISVPLLMYCCGCNICI-FSPRSINNSSRVVRLSRC 375
S +++SE S+N S L+Y C +C+ F +N V L+ C
Sbjct: 570 SDQYEDSEDSRNFPSKLYLVYLSNCPLCLKFKLSKVNQQKATVHLATC 617
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -2
Query: 410 YAKIVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPFCDDSEFLNRL 237
+++I N+ S DKR E+ + +Q+ Q++ + +IPF S F+ RL
Sbjct: 51 FSQINAAYNILSNDDKRKWHEKDYLRNQYSVQIEDVLQHLQTIEKIPFESTSAFVERL 108
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -2
Query: 554 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 396
PQ+T++ + D VR T+D ++++I +S+F +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 284 GTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTM 177
GT I E N L ID PLSR Y+NA T+
Sbjct: 1198 GTMIAAETFDELENNLALAIDRLPLSRNYFNAGLTL 1233
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 123 LNVE-LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 254
LNV L +GH FHG V GRI++ T Y E+ V ++
Sbjct: 268 LNVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/63 (20%), Positives = 26/63 (41%)
Frame = -2
Query: 659 KISDVVMTMIFLLRSEKYHSLFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPSTT 480
K D+ + K+ L +++ DY Q+ ++ D LLD R+ +
Sbjct: 438 KDQDITYICLSTAHPAKFDKAVNLALSSYSDYNFNTQVLPIEFDGLLDEERTCIFSGKPN 497
Query: 479 VDL 471
+D+
Sbjct: 498 IDI 500
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 254 EFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFN--IEDYNNIFKVME 93
EFLN + +P+SRM N + +E + CK N ED++ I + E
Sbjct: 87 EFLNGFVSRFPNHPISRM--NKIQSKMLEMLEEWNYMLCKNNRHREDFSRIHDIRE 140
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -1
Query: 549 NDAGSNGHAVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 409
N+ G++G +G+ D+F+ + L D ++ ++ F++SD I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 281 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFNIEDYNN 111
TE+ C+DS++ R L + + +PLS + +NT E YA N + +N
Sbjct: 378 TELFQCEDSKYYVRHLVNEEVFPLSDCGFGPSNTS-DGMCELYAYLNSPVRVNGTSN 433
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 281 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 180
TE+ FC DS++ R L + YPL Y + T
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 125 EDYNNIFKVMENIRKHSNKNLNDQD 51
ED N+ K ++RKH +N D+D
Sbjct: 86 EDLYNLIKKAVSVRKHLERNRKDKD 110
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = -2
Query: 470 TTVDIMRSSFARCFNSPIMKYAKIVLLQNVASQRDKRT-TLEELLIERGEKIQMLQPQQY 294
TTV + + A+ F + K LLQ S+R+ ++E + E Q
Sbjct: 149 TTVQFLPTRLAKIFEKKASEVLKDNLLQTCNSKREGEVCDVKEPAVASSESSDCFNDMQE 208
Query: 293 INSGTEIPFCDDSEF-LNRLL 234
+N+ ++ +S F NRLL
Sbjct: 209 LNNIVDLRDYSNSRFQQNRLL 229
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 722 RNAARKLIHHYSLNSTS 672
R RKL+HH SLN+ S
Sbjct: 65 RKPTRKLVHHISLNNVS 81
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 235 SSLFKNSESS----QNGISV-PLLMYCCGCNICIFSPRSINN 345
SS F+ ES+ Q I+V PLL+ C CN FS RS+ +
Sbjct: 1230 SSAFQRYESTLTDDQCFINVSPLLLKCPSCNATSFSLRSVKS 1271
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 625 CCDRKSIIRCSNCSKPRL--TTTRADRK*RRFKRTRCWTPCDLC 500
C D K ++C C KP L + +D + ++CWT C C
Sbjct: 369 CYDNKYAVKCKKCRKPILGISVKGSDGE----YHSQCWT-CGAC 407
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,287
Number of Sequences: 5004
Number of extensions: 67810
Number of successful extensions: 271
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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