Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h16
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           30   2.7  
07_03_1289 + 25531531-25531995                                         30   2.7  
02_05_0433 - 28939817-28940146                                         30   2.7  
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940...    29   3.6  
02_05_0501 + 29566865-29567317                                         28   8.3  

>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = -2

Query: 467 TVDIMRSSFARCFNSPIMKYAKIVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQYIN 288
           ++D +  + AR F SP+ +     ++  +A  ++K+T +E  + +    +    P  +  
Sbjct: 333 SIDQVAKTAARVFGSPVRQ----PVVSPLAPGKEKKTAVETSVSDYSLAVPHFAPGDFET 388

Query: 287 SGTEIPFCDDSEFLNRLL 234
               IPF +     NRL+
Sbjct: 389 RAELIPFVEGKSIFNRLI 406


>07_03_1289 + 25531531-25531995
          Length = 154

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = +2

Query: 485 SKASPTEIARRPTACPFEPASFAVCTCSRQT 577
           SK  PT  A RPTA    PA   V  C  QT
Sbjct: 99  SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129


>02_05_0433 - 28939817-28940146
          Length = 109

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +3

Query: 453 HNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGF-EQFEQRMI 608
           H +D R+ +   RH Q+R+  ++Q+ R +++ L   R+++++ + E+ EQR +
Sbjct: 32  HRLDVRRQEALERHAQERA-AIEQQWRQSMQALERERLMLEQAWMEREEQRRV 83


>10_06_0004 -
           9407954-9408007,9408219-9408386,9408441-9408542,
           9408710-9408934,9409889-9410047,9411768-9411900,
           9412827-9413758,9413842-9413987,9415863-9416082
          Length = 712

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 615 GKVSFVVQ--TARNHV*RLHVQTANDAGSNGHAVGRRAISVGDAFDH 481
           G VSF V   T  NH  ++ V  AN+    G+  G R    G+A DH
Sbjct: 188 GNVSFTVSLTTPLNH--QIRVTNANEIIMEGYCPGERPTEYGNASDH 232


>02_05_0501 + 29566865-29567317
          Length = 150

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 742 SSSEGCAGATALARANKFITGRGVXWADAGAATTTPAF 855
           SSS    G  + + + +F+ G G    D G  T  P+F
Sbjct: 70  SSSSSAGGGCSRSSSTRFLVGGGKHHVDGGRRTVPPSF 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,895,927
Number of Sequences: 37544
Number of extensions: 451289
Number of successful extensions: 1460
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)