Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h16
(855 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT012673-1|AAT09323.1| 876|Drosophila melanogaster SD07102p pro... 33 0.50
AY052115-1|AAK93539.1| 1358|Drosophila melanogaster SD06557p pro... 33 0.50
AE014296-2810|AAF49404.2| 1734|Drosophila melanogaster CG9715-PA... 33 0.50
AL133503-1|CAB63507.1| 259|Drosophila melanogaster EG:BACH48C10... 31 2.0
AE014298-383|AAF45771.1| 259|Drosophila melanogaster CG14050-PA... 31 2.0
S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase... 31 2.7
AY128464-1|AAM75057.1| 659|Drosophila melanogaster RE19005p pro... 30 3.5
AY060958-1|AAL28506.1| 568|Drosophila melanogaster GM08907p pro... 30 3.5
AE014296-1984|AAN11876.1| 649|Drosophila melanogaster CG6091-PC... 30 3.5
AE014296-1983|AAF50041.1| 649|Drosophila melanogaster CG6091-PA... 30 3.5
BT003302-1|AAO25062.1| 653|Drosophila melanogaster GH11071p pro... 29 6.2
AE014134-784|AAN10338.1| 653|Drosophila melanogaster CG2950-PC,... 29 6.2
AE014134-783|AAF50972.1| 653|Drosophila melanogaster CG2950-PB,... 29 6.2
AE014134-782|AAF50973.1| 653|Drosophila melanogaster CG2950-PA,... 29 6.2
AY071145-1|AAL48767.1| 520|Drosophila melanogaster RE18068p pro... 29 8.1
AE014297-1231|AAF54580.2| 520|Drosophila melanogaster CG4674-PA... 29 8.1
>BT012673-1|AAT09323.1| 876|Drosophila melanogaster SD07102p
protein.
Length = 876
Score = 33.1 bits (72), Expect = 0.50
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +3
Query: 411 FHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQ 590
FH+R V CK R H +D R H RS+ + R+ R ++ + + FE
Sbjct: 54 FHSRLVCQLCKMRGHGVDHCPDKWRRYHSTTRSN-TELDSRVQYRSVQCSYCAGRHSFEN 112
Query: 591 FEQRMILFRS 620
QR+ FRS
Sbjct: 113 CRQRIGDFRS 122
>AY052115-1|AAK93539.1| 1358|Drosophila melanogaster SD06557p
protein.
Length = 1358
Score = 33.1 bits (72), Expect = 0.50
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +3
Query: 411 FHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQ 590
FH+R V CK R H +D R H RS+ + R+ R ++ + + FE
Sbjct: 536 FHSRLVCQLCKMRGHGVDHCPDKWRRYHSTTRSN-TELDSRVQYRSVQCSYCAGRHSFEN 594
Query: 591 FEQRMILFRS 620
QR+ FRS
Sbjct: 595 CRQRIGDFRS 604
>AE014296-2810|AAF49404.2| 1734|Drosophila melanogaster CG9715-PA
protein.
Length = 1734
Score = 33.1 bits (72), Expect = 0.50
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +3
Query: 411 FHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQ 590
FH+R V CK R H +D R H RS+ + R+ R ++ + + FE
Sbjct: 912 FHSRLVCQLCKMRGHGVDHCPDKWRRYHSTTRSN-TELDSRVQYRSVQCSYCAGRHSFEN 970
Query: 591 FEQRMILFRS 620
QR+ FRS
Sbjct: 971 CRQRIGDFRS 980
>AL133503-1|CAB63507.1| 259|Drosophila melanogaster EG:BACH48C10.1
protein.
Length = 259
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 408 VFHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSA 560
V+ RT ++TCKR ++ GR + RHL+++ + V R +R+A
Sbjct: 14 VYSERTRKSTCKRCHFDMAGRHSENLMRHLKRKHEDAYKSVLDEKREIRAA 64
>AE014298-383|AAF45771.1| 259|Drosophila melanogaster CG14050-PA
protein.
Length = 259
Score = 31.1 bits (67), Expect = 2.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 408 VFHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSA 560
V+ RT ++TCKR ++ GR + RHL+++ + V R +R+A
Sbjct: 14 VYSERTRKSTCKRCHFDMAGRHSENLMRHLKRKHEDAYKSVLDEKREIRAA 64
>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
polymerase-primase 180 kdasubunit protein.
Length = 1490
Score = 30.7 bits (66), Expect = 2.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 131 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 39
NI DY+ ++K+ NI++ NK L Q+EL+I
Sbjct: 1023 NITDYDQVYKIGHNIKQSVNK-LYKQEELDI 1052
>AY128464-1|AAM75057.1| 659|Drosophila melanogaster RE19005p
protein.
Length = 659
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -1
Query: 324 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 163
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AY060958-1|AAL28506.1| 568|Drosophila melanogaster GM08907p
protein.
Length = 568
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -1
Query: 324 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 163
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE014296-1984|AAN11876.1| 649|Drosophila melanogaster CG6091-PC,
isoform C protein.
Length = 649
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -1
Query: 324 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 163
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE014296-1983|AAF50041.1| 649|Drosophila melanogaster CG6091-PA,
isoform A protein.
Length = 649
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = -1
Query: 324 EDTNVAAATIHQQRYRNSVL------RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 163
E + V+ H +RN V+ RR V+++ A+THR P +S + ++H H H
Sbjct: 32 EQSVVSQTHNHAHNHRNVVIDGQSPQRRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>BT003302-1|AAO25062.1| 653|Drosophila melanogaster GH11071p
protein.
Length = 653
Score = 29.5 bits (63), Expect = 6.2
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -2
Query: 818 HXTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 639
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 638 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 483
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AE014134-784|AAN10338.1| 653|Drosophila melanogaster CG2950-PC,
isoform C protein.
Length = 653
Score = 29.5 bits (63), Expect = 6.2
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -2
Query: 818 HXTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 639
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 638 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 483
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AE014134-783|AAF50972.1| 653|Drosophila melanogaster CG2950-PB,
isoform B protein.
Length = 653
Score = 29.5 bits (63), Expect = 6.2
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -2
Query: 818 HXTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 639
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 638 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 483
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AE014134-782|AAF50973.1| 653|Drosophila melanogaster CG2950-PA,
isoform A protein.
Length = 653
Score = 29.5 bits (63), Expect = 6.2
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Frame = -2
Query: 818 HXTPRPVINLFARANAVAPAQPSEELINMRRYRNAARKLIHHYSLNSTSSTEYKISDVVM 639
H + V + A A A A AQ + + R + L+H YS N S EYK + V
Sbjct: 373 HQQQQQVAAVAAAAAAAAHAQATAAAGKVLRPNQ--QLLMHSYSTNDASVGEYKFTVNVG 430
Query: 638 TMIFLLRSEKYHSLFKLLETTFDDYTCRPQ-MTQVQTDTLLDAVRSLLEMPST 483
+ + + L ++ + DDY + + ++ D SL+ PST
Sbjct: 431 QHLIKITGD-CCELVRVAKLVLDDYFSSSEFLASIEAGAAFDGT-SLVTTPST 481
>AY071145-1|AAL48767.1| 520|Drosophila melanogaster RE18068p
protein.
Length = 520
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 301 NNTSTAVPKFRFATIQSF*TGCSNT*IRTRSVGCITM 191
NN++TAV K RF +Q + T S+ +R + V CI +
Sbjct: 204 NNSTTAVEKLRFTVLQ-YVTYYSHVPLRVQKVECIAV 239
>AE014297-1231|AAF54580.2| 520|Drosophila melanogaster CG4674-PA
protein.
Length = 520
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 301 NNTSTAVPKFRFATIQSF*TGCSNT*IRTRSVGCITM 191
NN++TAV K RF +Q + T S+ +R + V CI +
Sbjct: 204 NNSTTAVEKLRFTVLQ-YVTYYSHVPLRVQKVECIAV 239
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,912,081
Number of Sequences: 53049
Number of extensions: 796904
Number of successful extensions: 2884
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2884
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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