Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h11
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   2.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   2.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   2.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   2.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.4  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 136 SLRRYSAGLGREKKSSKN 83
           S +RYS    REKKS KN
Sbjct: 35  SRKRYSRSREREKKSYKN 52


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 136 SLRRYSAGLGREKKSSKN 83
           S +RYS    REKKS KN
Sbjct: 35  SRKRYSRSREREKKSYKN 52


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 136 SLRRYSAGLGREKKSSKN 83
           S +RYS    REKKS KN
Sbjct: 35  SRKRYSRSREREKKSYKN 52


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 136 SLRRYSAGLGREKKSSKN 83
           S +RYS    REKKS KN
Sbjct: 35  SRKRYSRSREREKKSYKN 52


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 136 SLRRYSAGLGREKKSSKN 83
           S +RYS    REKKS KN
Sbjct: 268 SRKRYSRSREREKKSYKN 285


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 344 RHD-RGRPIARYRRPQLLVQLHLALFRVHA 430
           +HD +GRPI+  +   L V+L   +  +HA
Sbjct: 542 KHDHQGRPISISKNQHLFVELDQFIQNLHA 571


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 156 VDGLLYRPLLQHQLRSTRSVWSG 224
           V G+L +  L H LR   +++SG
Sbjct: 612 VKGILLKSGLYHVLRGNENIYSG 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,119
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)