Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h10
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    50   6e-07
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    28   1.5  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   4.6  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    26   6.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   8.0  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    26   8.0  

>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 12/201 (5%)
 Frame = -3

Query: 861 LLSLQTKGKKQIQSCAISPNGELIVYSTESHTRMLKLDSDDESNVYLSKVILNG-SITTC 685
           LL +    ++ I   AISP+GELI  S+   T++ +L   DE NV +  V  +  S    
Sbjct: 373 LLKIVLADEENISHAAISPDGELIAISSVLRTKLYQLQYSDE-NVKVETVEDSFLSNIGA 431

Query: 684 SHFAFTED-SKVLIVYNAGTISFLQVDP---------EAGVTVTQTINTKKHLSCKSILH 535
           S  +FT D +K+++V N   I  +++           E     ++ I  ++  +  S+  
Sbjct: 432 SLLSFTVDKNKLILVSNDSEIFLIELSRLDSRQLEVFELSQPTSKKIAPRQRSNVSSMCD 491

Query: 534 FQISKKCPSNKVYLVVADTQGDIVIWTQIGKKFEHYITLPKYHCVPSAMVVDAE-KETLI 358
              S    S+  Y  VADT G+I  ++        Y  LP+ +    AM    + +  L 
Sbjct: 492 GICSIAVSSDGDYFAVADTVGNIFCYSLSNLT---YSELPRVNTYVRAMAFRPDVRGRLA 548

Query: 357 VAYVDRKVVEYELFEKKFSDW 295
           VA    +V E+++  +K S+W
Sbjct: 549 VATAGNQVYEFDVQSRKLSEW 569


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -3

Query: 831 QIQSCAISPNGELIVYSTESHTRMLKLDSDDESNVYLSKVILNGSITTCSHFAFTEDSKV 652
           ++ +CAIS NG +   S +S T    +    E+  +  + +L G   T +   F+ D + 
Sbjct: 533 EVYACAISNNGNIAATSCKSQTPEHAVIRLYETQSWNQQQVLKGHSLTVTTIKFSPDDRY 592

Query: 651 LI 646
           ++
Sbjct: 593 IL 594


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 146 VGSISNCAFLSNTNRSLKCWNT-----TDWPLGCGCTDSTH 253
           VGS ++   L++T++ L+ W T      D PL C  + STH
Sbjct: 120 VGSNTDSQLLASTDQQLRLWKTDFEAGIDSPLLCQASLSTH 160


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 430 VFEFLSNLCPYYYITLCVRYH*IHFIARTFL 522
           VF  L  +  ++ +  C+RYH  +F   TFL
Sbjct: 14  VFVGLCGINRFFTLPKCIRYHFRYFACHTFL 44


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 345 QRMLLSKSPFRHRQPWPMVHNDISAMLYSVRISFQFVSILLYHLVC 482
           Q++++   P R+R  +P   N  S  L  +R+   F+SI    ++C
Sbjct: 94  QKVIVDHPPVRYRVTFPWNRNAKSYCLVDLRMRAIFLSIDEISMIC 139


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 762 MLKLDSDDESNVYLSKVILNGSITTCSHFAFTEDSKVLIVYNAGTIS 622
           ML+  +DD+    LSK     +I  C    F  D++ L  ++  TI+
Sbjct: 186 MLRKATDDDRWKTLSKESARATIDECMRVLFYRDARSLNKFSVATIT 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,810,642
Number of Sequences: 5004
Number of extensions: 83764
Number of successful extensions: 296
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)