Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h10
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0094 + 702104-702444,702559-702568                               29   4.8  
01_04_0072 - 15721866-15723563                                         29   4.8  
01_04_0070 - 15704794-15706491                                         29   4.8  
12_01_0094 + 736406-736746,736885-736894                               28   8.5  
04_04_0490 + 25603540-25603591,25603612-25604105,25604184-25604870     28   8.5  

>11_01_0094 + 702104-702444,702559-702568
          Length = 116

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 326 MNCSRKNSVIGPARPCPPCGTTRSSACCPYTRT-RAASPSCSNT*EICS 183
           + C + NS +GP       G   S+ACC   R+ +AA+ S ++    C+
Sbjct: 26  ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASSTADRRTACN 74


>01_04_0072 - 15721866-15723563
          Length = 565

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 346 NVCYYQSLLFGIDNHGRWYTMIFRQCYIVFEFLSNLCPYYYITLCVRYH 492
           +V  YQ+L    +NHG  YT  +     +  FL+  C ++ IT  + Y+
Sbjct: 325 SVMAYQALSPSFNNHGECYTSNWWLTVSLVTFLTVFCIFFAITDTIYYN 373


>01_04_0070 - 15704794-15706491
          Length = 565

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 346 NVCYYQSLLFGIDNHGRWYTMIFRQCYIVFEFLSNLCPYYYITLCVRYH 492
           +V  YQ+L    +NHG  YT  +     +  FL+  C ++ IT  + Y+
Sbjct: 325 SVMAYQALSPSFNNHGECYTSNWWLTVSLVTFLTVFCIFFAITDTIYYN 373


>12_01_0094 + 736406-736746,736885-736894
          Length = 116

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 326 MNCSRKNSVIGPARPCPPCGTTRSSACCPYTRTRAASPS 210
           + C + NS +GP       G   S+ACC   R+  A+ S
Sbjct: 26  ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAAS 64


>04_04_0490 + 25603540-25603591,25603612-25604105,25604184-25604870
          Length = 410

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 623 LMVPALYTINTLESSVKAKWLHVVIEPF 706
           L+VPA Y +  LES   AKW + V  PF
Sbjct: 324 LLVPARYMVPVLESEFFAKWRYAVY-PF 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,181,281
Number of Sequences: 37544
Number of extensions: 523437
Number of successful extensions: 1519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)