Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h10
(869 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069620-1|AAL39765.1| 696|Drosophila melanogaster LD39110p pro... 84 2e-16
AE014296-2660|AAF49526.1| 696|Drosophila melanogaster CG5018-PA... 84 2e-16
X67704-1|CAA47941.1| 334|Drosophila melanogaster sperm protein ... 32 0.89
AY060667-1|AAL28215.1| 334|Drosophila melanogaster GH09231p pro... 32 0.89
AE014297-4221|AAF56779.1| 334|Drosophila melanogaster CG11719-P... 32 0.89
AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p pro... 31 1.6
AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA... 31 1.6
X67703-2|CAA47938.1| 74|Drosophila melanogaster Mst84Db protein. 31 2.1
AE014296-3317|AAF49038.2| 1350|Drosophila melanogaster CG32226-P... 31 2.1
AY051500-1|AAK92924.1| 688|Drosophila melanogaster GH15286p pro... 30 4.8
AE014297-3956|AAN14075.1| 688|Drosophila melanogaster CG5455-PC... 30 4.8
AE014297-3955|AAN14074.1| 688|Drosophila melanogaster CG5455-PB... 30 4.8
AE014297-3954|AAF56596.1| 688|Drosophila melanogaster CG5455-PA... 30 4.8
AE014297-606|AAF54024.1| 74|Drosophila melanogaster CG17934-PA... 29 6.3
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 29 8.3
>AY069620-1|AAL39765.1| 696|Drosophila melanogaster LD39110p protein.
Length = 696
Score = 84.2 bits (199), Expect = 2e-16
Identities = 78/303 (25%), Positives = 141/303 (46%), Gaps = 17/303 (5%)
Frame = -3
Query: 864 KLLSLQTKGKKQIQSCAISPNGELIVYSTESHTRMLKLDSDDESNVYLSKVI--LNGSIT 691
KLL L K IQS AIS + I YST R+ +L SD + + +++ L +
Sbjct: 392 KLLQLNVKEHNFIQSAAISSDANWICYSTLKELRISRLKSDP---LQVERLVDDLPEELQ 448
Query: 690 TCSHFAFTEDSKVLIVYNAGT-ISFLQVDPEAGVTVTQTINTKKHLSCKS-ILHFQISKK 517
SH FT+ ++++ +S+ ++ + VT TI+ + CK+ I H IS
Sbjct: 449 PASHIIFTKQGDLVLLNPQNNHLSWFTLEEDL-VTFKYTIDLSE--KCKNTISHVVIS-- 503
Query: 516 CPSNKVYLVVADTQGDIVIWTQIGKKFEHYITLPKYHCVPSAMVVDAEKETLIVAYVDRK 337
S+ Y+V A + I +W GK+++H + LP++ +A+ + + ++VAY + +
Sbjct: 504 --SHGEYIVAASSDHIISVWKLHGKQYKHLLNLPRHRAGTTALSMHEDYPRVVVAYANGQ 561
Query: 336 VVEYELFEKKFSDWPGSAMPPVWYDTKQCVLSVHPHPSGQSVVFQHLR-DLFVLDRKAQF 160
+VEY+L + F+ + P + C+ + P +++ H +L+VL+R
Sbjct: 562 LVEYDLVNRIFTCETNEYLIP--ETRRHCINGISLDPQNRNIFIVHTEGNLYVLERDQHL 619
Query: 159 E----MEPTKKKK-------SADAGEMNLGYH-ILPMKYLSDFYWLGKSEAVTVEILPEN 16
+ + +K KK S D G L L ++L L +E V V I N
Sbjct: 620 DPKELVSNSKSKKLSNGNRSSVDGGSKGLSLKTTLSRQHLVHVSRLSPNELVNVSISTNN 679
Query: 15 IMS 7
+++
Sbjct: 680 LLA 682
>AE014296-2660|AAF49526.1| 696|Drosophila melanogaster CG5018-PA
protein.
Length = 696
Score = 84.2 bits (199), Expect = 2e-16
Identities = 78/303 (25%), Positives = 141/303 (46%), Gaps = 17/303 (5%)
Frame = -3
Query: 864 KLLSLQTKGKKQIQSCAISPNGELIVYSTESHTRMLKLDSDDESNVYLSKVI--LNGSIT 691
KLL L K IQS AIS + I YST R+ +L SD + + +++ L +
Sbjct: 392 KLLQLNVKEHNFIQSAAISSDANWICYSTLKELRISRLKSDP---LQVERLVDDLPEELQ 448
Query: 690 TCSHFAFTEDSKVLIVYNAGT-ISFLQVDPEAGVTVTQTINTKKHLSCKS-ILHFQISKK 517
SH FT+ ++++ +S+ ++ + VT TI+ + CK+ I H IS
Sbjct: 449 PASHIIFTKQGDLVLLNPQNNHLSWFTLEEDL-VTFKYTIDLSE--KCKNTISHVVIS-- 503
Query: 516 CPSNKVYLVVADTQGDIVIWTQIGKKFEHYITLPKYHCVPSAMVVDAEKETLIVAYVDRK 337
S+ Y+V A + I +W GK+++H + LP++ +A+ + + ++VAY + +
Sbjct: 504 --SHGEYIVAASSDHIISVWKLHGKQYKHLLNLPRHRAGTTALSMHEDYPRVVVAYANGQ 561
Query: 336 VVEYELFEKKFSDWPGSAMPPVWYDTKQCVLSVHPHPSGQSVVFQHLR-DLFVLDRKAQF 160
+VEY+L + F+ + P + C+ + P +++ H +L+VL+R
Sbjct: 562 LVEYDLVNRIFTCETNEYLIP--ETRRHCINGISLDPQNRNIFIVHTEGNLYVLERDQHL 619
Query: 159 E----MEPTKKKK-------SADAGEMNLGYH-ILPMKYLSDFYWLGKSEAVTVEILPEN 16
+ + +K KK S D G L L ++L L +E V V I N
Sbjct: 620 DPKELVSNSKSKKLSNGNRSSVDGGSKGLSLKTTLSRQHLVHVSRLSPNELVNVSISTNN 679
Query: 15 IMS 7
+++
Sbjct: 680 LLA 682
>X67704-1|CAA47941.1| 334|Drosophila melanogaster sperm protein
protein.
Length = 334
Score = 32.3 bits (70), Expect = 0.89
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 296 GPARPCPPCGTTRSSACCPYTRTRAASPSC 207
GP PC PCG +S C P SP C
Sbjct: 265 GPCAPCGPCGPLGNSPCGPCGPCGPCSPPC 294
>AY060667-1|AAL28215.1| 334|Drosophila melanogaster GH09231p
protein.
Length = 334
Score = 32.3 bits (70), Expect = 0.89
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 296 GPARPCPPCGTTRSSACCPYTRTRAASPSC 207
GP PC PCG +S C P SP C
Sbjct: 265 GPCAPCGPCGPLGNSPCGPCGPCGPCSPPC 294
>AE014297-4221|AAF56779.1| 334|Drosophila melanogaster CG11719-PA
protein.
Length = 334
Score = 32.3 bits (70), Expect = 0.89
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -1
Query: 296 GPARPCPPCGTTRSSACCPYTRTRAASPSC 207
GP PC PCG +S C P SP C
Sbjct: 265 GPCAPCGPCGPLGNSPCGPCGPCGPCSPPC 294
>AY061391-1|AAL28939.1| 1712|Drosophila melanogaster LD31383p protein.
Length = 1712
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 205 PTLE-RSVRIGQESAV*NGANQKEEIGGRRRNESRLSYSSHEVSLRFLLARQE 50
P +E R + I Q SA+ +G G RR++S L+Y +HE+ L +L + +
Sbjct: 1080 PNVEHRRISIEQRSAIIDGRRNGILAGSMRRHQS-LNYENHEIMLNSMLPKTD 1131
>AE014298-1589|AAF48024.2| 1712|Drosophila melanogaster CG1657-PA
protein.
Length = 1712
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 205 PTLE-RSVRIGQESAV*NGANQKEEIGGRRRNESRLSYSSHEVSLRFLLARQE 50
P +E R + I Q SA+ +G G RR++S L+Y +HE+ L +L + +
Sbjct: 1080 PNVEHRRISIEQRSAIIDGRRNGILAGSMRRHQS-LNYENHEIMLNSMLPKTD 1131
>X67703-2|CAA47938.1| 74|Drosophila melanogaster Mst84Db protein.
Length = 74
Score = 31.1 bits (67), Expect = 2.1
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = -1
Query: 320 CSRKNSVIGPARPCPPCGTTRS---SACCPYTRTRAASPSC 207
CS GP PC PCG+ S S C P+ P C
Sbjct: 12 CSPCGGPCGPCGPCGPCGSCCSPCGSCCAPWGPCGPCGPCC 52
>AE014296-3317|AAF49038.2| 1350|Drosophila melanogaster CG32226-PA
protein.
Length = 1350
Score = 31.1 bits (67), Expect = 2.1
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Frame = +2
Query: 113 ISPASADFFFLVGSISNCAF----LSNTNRSLKCWNTTDWPLGCGCTDSTHCFVSYHTGG 280
+S A+ D F +G+ C + +++ + + K W P+ T S+ VS +GG
Sbjct: 348 VSVAANDQVFAIGAADRCLYHRSGVTSADPTGKKWRLIQCPMQISRTSSSLSIVSRKSGG 407
Query: 281 MAE-PGQSLNFFSN---NSYSTTFLSTYATIKVSFSAST 385
+ PG FSN + T A I+ ++ST
Sbjct: 408 SSSTPGSKHQSFSNLYSKEKEKGVVETCAVIETVLNSST 446
>AY051500-1|AAK92924.1| 688|Drosophila melanogaster GH15286p
protein.
Length = 688
Score = 29.9 bits (64), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 317 SRKNSVIGPARPCPPCGTTRSSACCPYTRTRAASPSC 207
S +++ P+ PC PC T+ P+ R+ +P+C
Sbjct: 224 SLPDTLSAPSTPCTPCPTSNPMQGPPFYTVRSDAPNC 260
>AE014297-3956|AAN14075.1| 688|Drosophila melanogaster CG5455-PC,
isoform C protein.
Length = 688
Score = 29.9 bits (64), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 317 SRKNSVIGPARPCPPCGTTRSSACCPYTRTRAASPSC 207
S +++ P+ PC PC T+ P+ R+ +P+C
Sbjct: 224 SLPDTLSAPSTPCTPCPTSNPMQGPPFYTVRSDAPNC 260
>AE014297-3955|AAN14074.1| 688|Drosophila melanogaster CG5455-PB,
isoform B protein.
Length = 688
Score = 29.9 bits (64), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 317 SRKNSVIGPARPCPPCGTTRSSACCPYTRTRAASPSC 207
S +++ P+ PC PC T+ P+ R+ +P+C
Sbjct: 224 SLPDTLSAPSTPCTPCPTSNPMQGPPFYTVRSDAPNC 260
>AE014297-3954|AAF56596.1| 688|Drosophila melanogaster CG5455-PA,
isoform A protein.
Length = 688
Score = 29.9 bits (64), Expect = 4.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 317 SRKNSVIGPARPCPPCGTTRSSACCPYTRTRAASPSC 207
S +++ P+ PC PC T+ P+ R+ +P+C
Sbjct: 224 SLPDTLSAPSTPCTPCPTSNPMQGPPFYTVRSDAPNC 260
>AE014297-606|AAF54024.1| 74|Drosophila melanogaster CG17934-PA
protein.
Length = 74
Score = 29.5 bits (63), Expect = 6.3
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = -1
Query: 320 CSRKNSVIGPARPCPPCGTTRS---SACCPYTRTRAASPSC 207
CS GP PC PCG+ S S C P P C
Sbjct: 12 CSPCGGPCGPCGPCGPCGSCCSPCGSCCAPCGPCGPCGPCC 52
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 29.1 bits (62), Expect = 8.3
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 830 RFSHVPFHQMESLSFTPQ-RVTQGCLNWIVMTNRMYIYLKSY*MVQ*RHVAISLSQKTLK 654
RF + FH+ + LSFT Q + T + I + ++MY + +SY R + L Q ++
Sbjct: 140 RFKDIQFHEGDKLSFTNQEKHTINTTHNIPVYSKMYSFQQSYEQEVERQIQEMLEQGIIR 199
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,539,050
Number of Sequences: 53049
Number of extensions: 896502
Number of successful extensions: 2869
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2847
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4209111660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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