Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h10
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical ... 30 1.9
U88314-2|AAF99884.2| 461|Caenorhabditis elegans Let-23 fertilit... 29 4.3
AF045613-1|AAC38962.1| 461|Caenorhabditis elegans inositol tris... 29 4.3
Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.5
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 28 10.0
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 28 10.0
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 28 10.0
>AL032639-3|CAA21635.1| 283|Caenorhabditis elegans Hypothetical
protein Y38F1A.2 protein.
Length = 283
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 402 HNDISAMLYSVRISFQFVSILLYHLV 479
+NDI ++Y VRI F F+ ++ Y L+
Sbjct: 213 NNDIFTLVYQVRIGFVFICVITYFLL 238
>U88314-2|AAF99884.2| 461|Caenorhabditis elegans Let-23 fertility
effector/regulatorprotein 2, isoform c protein.
Length = 461
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = -1
Query: 320 CSRKNSVIGPARPCPPCGTTRSS-----ACCPYTRTRAASPSC 207
C ++++ A PP T+ +C PY TR ASP C
Sbjct: 75 CDHRDTMNSEASSSPPSAPTQERLMQIISCFPYPTTRPASPQC 117
>AF045613-1|AAC38962.1| 461|Caenorhabditis elegans inositol
trisphosphate 3-kinaseform 3 protein.
Length = 461
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = -1
Query: 320 CSRKNSVIGPARPCPPCGTTRSS-----ACCPYTRTRAASPSC 207
C ++++ A PP T+ +C PY TR ASP C
Sbjct: 75 CDHRDTMNSEASSSPPSAPTQERLMQIISCFPYPTTRPASPQC 117
>Z81567-3|CAB04587.1| 301|Caenorhabditis elegans Hypothetical
protein K08C9.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 208 HDGLAARVRVYGQHALLRVVPHGGHGRAGP 297
HDG+ + + Y QH ++ P G G AGP
Sbjct: 119 HDGIPSPIDAYAQHDCIK-CPAGAPGPAGP 147
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 105 GYHILPMKYLSDFYWLGKSEA---VTVEILPENIMSM 4
G H+L ++ + D+Y+ GK EA + ILP+NI+ +
Sbjct: 455 GDHLLIVEDVDDYYYKGKLEAFKTLPAGILPKNIVKL 491
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 828 IQSCAISPNGELIVYSTESHTRML-KLDSDDESNVYLSKVILNG 700
I AIS NG+LI Y T + KLD + N+ + LNG
Sbjct: 178 ILDTAISLNGDLIAYGTWKDAVFVGKLDFTERQNITWFPIDLNG 221
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 828 IQSCAISPNGELIVYSTESHTRML-KLDSDDESNVYLSKVILNG 700
I AIS NG+LI Y T + KLD + N+ + LNG
Sbjct: 219 ILDTAISLNGDLIAYGTWKDAVFVGKLDFTERQNITWFPIDLNG 262
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 331 YDLSVNVCYYQSLLFGIDNHGRWYTMIFRQCYIVFEFLSNLCPY 462
+D V YY+ + F D G+ Y +QC VF S LCPY
Sbjct: 505 FDQPVERRYYEDV-FVRDEPGKKYDA-HQQCKFVFGPASELCPY 546
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 331 YDLSVNVCYYQSLLFGIDNHGRWYTMIFRQCYIVFEFLSNLCPY 462
+D V YY+ + F D G+ Y +QC VF S LCPY
Sbjct: 505 FDQPVERRYYEDV-FVRDEPGKKYDA-HQQCKFVFGPASELCPY 546
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 528 ISKKCPSNKVYLVVADTQGDIVIWTQIGKKFEHYIT 421
I +KCPSN + T + W +G FE IT
Sbjct: 211 ILEKCPSNSMVQATLKTLQRFLTWIPVGYVFETNIT 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,183,960
Number of Sequences: 27780
Number of extensions: 476152
Number of successful extensions: 1598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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