Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h10
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 429 YITLPKYHCVPSAMVVDAEK 370
           ++T+P+Y  VPS++ V +EK
Sbjct: 81  FVTVPRYKGVPSSLNVISEK 100


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 460 MDTNWKEIRTLYNIAEISLCTIGH 389
           M   WK  RT ++I  + L   GH
Sbjct: 217 MKLGWKSARTRFDILPLILSANGH 240


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/49 (18%), Positives = 22/49 (44%)
 Frame = -3

Query: 747 SDDESNVYLSKVILNGSITTCSHFAFTEDSKVLIVYNAGTISFLQVDPE 601
           ++D  N    + +++G +   S     + + +L ++    +SF    PE
Sbjct: 199 AEDHCNKTAVRKVISGVVGAASSVTSIQVANLLRLFRIPLVSFFSTSPE 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,721
Number of Sequences: 438
Number of extensions: 6088
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)