Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h06
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 81 4e-16
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 81 5e-16
05_01_0120 - 828834-831143 38 0.004
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 32 0.32
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 32 0.32
10_08_0904 + 21464762-21467479 30 0.99
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 28 4.0
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 4.0
05_03_0043 - 7702940-7703077,7703361-7703420,7703562-7703612,770... 28 4.0
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 28 4.0
02_03_0101 + 15233783-15234601 28 5.3
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 27 7.0
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 27 9.2
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 27 9.2
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 81.4 bits (192), Expect = 4e-16
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Frame = -2
Query: 498 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIV----KQNPSIGAI 331
P W + G+ I ++ K PL E F ++++Q+V K IG +
Sbjct: 82 PQGWLDCPGSGEPI--DRIVPSKVPLD-ETFNESVPAGKRYSSKQVVNKQRKAGRDIGLV 138
Query: 330 IDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFIDTVEEFTEKCPGM---- 166
IDLTNT++YY + R G Y KI G+ +P V F+ V F ++
Sbjct: 139 IDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQSRNPK 198
Query: 165 LVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 13
+ VHCTHG NRTG+M+ YLM T + EA+N F + R I + +Y+Q
Sbjct: 199 YILVHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPPGIYKNDYIQ 249
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 81.0 bits (191), Expect = 5e-16
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = -2
Query: 342 IGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFIDTVEEFTE----- 181
IG +IDLTNT++YY + R G+ + KI G+ +P V F+ V F +
Sbjct: 163 IGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQS 222
Query: 180 KCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQDL 7
K P ++ VHCTHG NRTG+M+ YLM T EAIN F K R I +++Y++ L
Sbjct: 223 KNPKYIL-VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIEAL 279
>05_01_0120 - 828834-831143
Length = 769
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -2
Query: 288 FLRAGLLYKKIQVPGQTLPSESIVQEFIDTVEEFTE-KCPGMLVGVHCTHGINRTGYMVC 112
+ ++ L+Y+ + + Q P+E I D + F + + G V VHC G++R+ +V
Sbjct: 185 YFKSDLVYRTLWL--QDSPTEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 242
Query: 111 RYLMHTLGIAPQEAINRFEKARG 43
YLM G + +A + ARG
Sbjct: 243 AYLMWREGQSFDDAFQLVKAARG 265
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/90 (21%), Positives = 40/90 (44%)
Frame = -2
Query: 276 GLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 97
GL ++ VP + E+++ ++ E V VHC G++R+ ++ YLM
Sbjct: 91 GLRVTRMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMR 150
Query: 96 TLGIAPQEAINRFEKARGHKIERQNYVQDL 7
T + +EA+ ++ +++ L
Sbjct: 151 TEQKSLEEALESLKEVNESACPNDGFLEQL 180
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/90 (21%), Positives = 40/90 (44%)
Frame = -2
Query: 276 GLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 97
GL ++ VP + E+++ ++ E V VHC G++R+ ++ YLM
Sbjct: 91 GLRVTRMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMR 150
Query: 96 TLGIAPQEAINRFEKARGHKIERQNYVQDL 7
T + +EA+ ++ +++ L
Sbjct: 151 TEQKSLEEALESLKEVNESACPNDGFLEQL 180
>10_08_0904 + 21464762-21467479
Length = 905
Score = 30.3 bits (65), Expect = 0.99
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = -2
Query: 255 QVPGQTLPSESIVQEFID-TVEEFTEKCPGMLVGVHCTHGINRTGY-----MVCRYLMHT 94
Q+ GQ + E + E+I T+ + KC M + + + + M+C Y +H
Sbjct: 616 QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 675
Query: 93 LGIAPQEAINRFEKARGHKI 34
LG+ EA+ FE+ + +
Sbjct: 676 LGV---EALRMFERMQKENV 692
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -2
Query: 450 SNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQNPSIGAIIDLTNTSKYYDGVHFLR 280
SN++C L E +++VT W Q++K+N I + ++ + +K GV+ L+
Sbjct: 197 SNMLC---QLDKEKYSHVTKAS--WGEAQLIKRNTGIPSKQEILDVAKEVGGVYQLK 248
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Frame = +3
Query: 72 LPAAQYPGCALN------ICTPCNR 128
+PA Q+PGC +N +CT CN+
Sbjct: 236 IPACQHPGCKINGRTRIMVCTGCNK 260
>05_03_0043 -
7702940-7703077,7703361-7703420,7703562-7703612,
7705355-7705408,7707260-7707325,7707552-7707629,
7708568-7708970,7710492-7710493,7711076-7711078
Length = 284
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 222 CFQTAKSGQVLEFFCITGPPAKSAHHHN 305
C T+ +L+F PP +HHHN
Sbjct: 103 CITTSLGSNMLDFSNTAAPPELRSHHHN 130
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 171 GMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQDLL 4
G V VHC G +R+ +V YLM G+ +A N +K + + LL
Sbjct: 778 GGKVLVHCFEGKSRSATIVLAYLMLRKGLTLAKAWNLLKKVHRRAQPNDGFAKALL 833
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 468 GQVIKDSNLICFKTPLQPELFAYVTSEEDV-WTTEQIVKQNPSIGAIIDL 322
GQV+ D ++ K LF V DV W TEQ+V + +G ++D+
Sbjct: 14 GQVLDDMEVVEMKY-----LFGKVLMPSDVSWDTEQLVIPDEHVGKLLDM 58
>05_06_0119 +
25742277-25742434,25742976-25743061,25743146-25743223,
25743919-25744031,25744094-25744171,25744941-25744949,
25744981-25745082,25745165-25745714,25745941-25746146,
25746868-25747031,25747157-25747310
Length = 565
Score = 27.5 bits (58), Expect = 7.0
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Frame = -2
Query: 342 IGAIIDLTNTSKYYDGVHFLRAGLLYKK--IQVPGQTLPSESIVQEFIDTVEEFTEKCPG 169
+G + D DG L +LY + + PG TLP I F+ VE+ +
Sbjct: 80 LGEVDDTRGRVSLLDGGTILSLPMLYLQGVVLFPGATLPLRLIQGRFVAAVEKALRQ--- 136
Query: 168 MLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQD 10
V CT G+ + V Y H+ ++ A HKI + + D
Sbjct: 137 --VDAPCTIGV--FNFQVLMYKRHSTRHYANASVG--TTAEPHKIRQLGRMDD 183
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 28 SFNFVTSGFFKSIYGF 75
+FNF G+FKSI+G+
Sbjct: 103 AFNFAFKGYFKSIFGY 118
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 501 FPARWHNYLQCGQVIKDSNLICFKTPLQP 415
FPA H Y K+SNL F P+QP
Sbjct: 650 FPATVHRYRLSPCTSKESNLPTFMLPVQP 678
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,177
Number of Sequences: 37544
Number of extensions: 322027
Number of successful extensions: 814
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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