Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h05
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.8  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    26   5.5  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    26   7.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   7.3  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 664 VLDTELRYVKYKWMPTTELEYDAVNNSFNTLN 569
           ++D+ ++  K K  P+    +D ++NSFNTL+
Sbjct: 424 LIDSAMQTEKVKKDPSLSQVFDGISNSFNTLH 455


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 529 ELLHENIYECVIADTTINVLKHRRDRIV 446
           EL+H+ I   ++ D+T+  + H+ D IV
Sbjct: 204 ELVHDKIPATLVTDSTVASIMHKIDAIV 231


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 673 GYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTL 572
           GYV+ +     +  +WM T ++++D + +++N L
Sbjct: 374 GYVIDNIRSGKIDPRWMVTNKIKFDDLPDAYNKL 407


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 500 TFVNVFVQQLRQVG*NHETVQWPIECVKRIIHGVILQLGCRHPFIFDVS 646
           TF+++ ++       N     +P+E +   + G  + L C+ P IFD++
Sbjct: 477 TFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMT 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,883
Number of Sequences: 5004
Number of extensions: 54879
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)