Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11h05
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80455-6|AAB37884.1|  159|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   6.9  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   6.9  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   6.9  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   6.9  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   6.9  
U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    28   9.1  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    28   9.1  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      28   9.1  

>U80455-6|AAB37884.1|  159|Caenorhabditis elegans Hypothetical
           protein T01D1.4 protein.
          Length = 159

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -2

Query: 769 TLTDTCPEIELRFQQFFDPPLQQSDYMTVSVDGYVVLDTE 650
           T+++T  E + + +QF++P +Q+ D +++ V+G    D E
Sbjct: 70  TVSETMLEFDDKMEQFYEPQVQKEDVISLVVEGTCYYDVE 109


>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 458 ATMFQHVYCRVRD--HTFVNVFVQQLRQVG*NHETVQWPIECVKRIIHGVILQLGCRH 625
           A +FQ     VR+  H F  +FV  +R    N   V W I+    +I  +I+ +GC +
Sbjct: 364 ANLFQMACSDVRERFHIFALLFVVMIR----NMTAVNWNIDSFTEMIPDIIMVVGCEY 417


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 250 VKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQTARSIRL 429
           + ++ L   TLC  +V I+F+A I     L   +    R   +  +++ +   T  SI++
Sbjct: 201 ISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAERSLTIVTMIMAVQTVTFASIQI 260


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
           protein R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 351 PENTAYSYVSDGCIDFNSSDCPFYPLNVL*FGTIRSRRCFNTFIVVSAIT 500
           P+N   + VS G I   + + PFY +N++ FG        N  ++ S +T
Sbjct: 61  PQNPTINQVSPGQIFSGTGNNPFYGVNLVPFGPEAGDLMVNPSMLTSGMT 110


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 268 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 402
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 268 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 402
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 268 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 402
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 305 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 192
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical
           protein F08F3.10 protein.
          Length = 62

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 456 SRRCFNTFIVVSAITHS*MFSCSNSGKLVKITRPFNGPLSVLNELFTA 599
           SR  + T IV+  I H+ +F+C+N   L K  R  +  L +LNE+ +A
Sbjct: 4   SRVAWFTLIVI--IFHT-LFACTNLYLLAKFHRFLDEKLMILNEILSA 48


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 622 PTTELEYDAVNNSFNTLNGPLNG 554
           PT + +YD++  S N +NG L+G
Sbjct: 115 PTDQAKYDSIFQSLNPVNGKLSG 137


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 622 PTTELEYDAVNNSFNTLNGPLNG 554
           PT + +YD++  S N +NG L+G
Sbjct: 115 PTDQAKYDSIFQSLNPVNGKLSG 137


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 622 PTTELEYDAVNNSFNTLNGPLNG 554
           PT + +YD++  S N +NG L+G
Sbjct: 160 PTDQAKYDSIFQSLNPVNGKLSG 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,282
Number of Sequences: 27780
Number of extensions: 318196
Number of successful extensions: 1036
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)