Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h05
(812 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 24 1.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.5
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.4
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 4.4
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 7.8
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 7.8
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 23.8 bits (49), Expect = 1.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 540 VKITRPFNGPLSVLNELFTASYSNSVVGIHLYLTYLNSVSSTTYPSTDTVM 692
V+I R N ++ ++ T + +LYLTY +V +P T++
Sbjct: 332 VRIQRQENNIRPMVKQIDTVAAEWPATTNYLYLTYNGTVHDVEFPGXYTMV 382
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = -2
Query: 721 FDPPLQQSDYMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVIL 542
F P + +T+ V + L L V MPTT + + FN + + V+L
Sbjct: 216 FTLPPDSGEKLTLGVTILLSLTVFLNLVAES-MPTTSDAVPLIGSYFNCIMFMVASSVVL 274
Query: 541 TNLPELLHENIYECVIADTTINVL 470
T L + H + + + I +L
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKML 298
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = -2
Query: 721 FDPPLQQSDYMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVIL 542
F P + +T+ V + L L V MPTT + + FN + + V+L
Sbjct: 216 FTLPPDSGEKLTLGVTILLSLTVFLNLVAES-MPTTSDAVPLIGSYFNCIMFMVASSVVL 274
Query: 541 TNLPELLHENIYECVIADTTINVL 470
T L + H + + + I +L
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKML 298
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = -2
Query: 721 FDPPLQQSDYMTVSVDGYVVLDTELRYVKYKWMPTTELEYDAVNNSFNTLNGPLNGLVIL 542
F P + +T+ V + L L V MPTT + + FN + + V+L
Sbjct: 216 FTLPPDSGEKLTLGVTILLSLTVFLNLVAES-MPTTSDAVPLIGSYFNCIMFMVASSVVL 274
Query: 541 TNLPELLHENIYECVIADTTINVL 470
T L + H + + + I +L
Sbjct: 275 TVLVLIFHHRTPDRYVMPSWIKML 298
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.4 bits (48), Expect = 2.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 295 VTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 402
+T++F+ + + S TVP + + MV++TL+
Sbjct: 278 LTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLS 313
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 249 CETDQTRKTYAVPWNCNNIFHCNYYNV 329
CE Q +K A C + F+C Y +
Sbjct: 591 CEVGQAKKYVAGEQCCWHCFNCTQYQI 617
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.6 bits (46), Expect = 4.4
Identities = 6/21 (28%), Positives = 14/21 (66%)
Frame = -2
Query: 691 MTVSVDGYVVLDTELRYVKYK 629
+ +S+D Y+ + ++Y K+K
Sbjct: 278 VAISIDRYIAVTQPIKYAKHK 298
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 482 NKRVETSSRPNRAKLKHVKRI 420
+ R E+S++ + KLKH++ +
Sbjct: 1794 SSRTESSNQLDAGKLKHIRAV 1814
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 482 NKRVETSSRPNRAKLKHVKRI 420
+ R E+S++ + KLKH++ +
Sbjct: 1790 SSRTESSNQLDAGKLKHIRAV 1810
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,921
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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