Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h03
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 37 0.004
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 0.004
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 35 0.018
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 32 0.094
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.094
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 31 0.22
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 31 0.29
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 30 0.38
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 27 2.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 8.2
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -1
Query: 683 YECKVCLERQRDAVLMPCRH-FC-VCVQCYFG---LDQKCPTCRQDV 558
Y+C +CL+ + PC H FC C+ G QKCP CR+ V
Sbjct: 204 YKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRH-FC-VCVQCYFGLDQKCPTCR 567
+ + EC++C D V+ PC H FC C+ +CPTCR
Sbjct: 163 VSRELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCR 207
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = -1
Query: 695 IEEKYECKVCLERQR---DAVLMPCRHFC--VCVQCYFGLDQKCPTCRQDV 558
I+E+ EC +C+E + D + +PC+H+ C++ + ++ C CR V
Sbjct: 390 IDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 32.3 bits (70), Expect = 0.094
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Frame = -1
Query: 692 EEKYECKVCLERQRDAVLMPCRH-FC-VCVQCYF-----GLDQKCPTC 570
+E CK+C E +DA+ C H FC +CV Y G + CP+C
Sbjct: 706 QENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSC 753
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 32.3 bits (70), Expect = 0.094
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTCRQ 564
I++ EC +C E + C H +C C+ + + CPTCRQ
Sbjct: 79 IKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQ 124
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 31.1 bits (67), Expect = 0.22
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 283 STTVKRTDSSHRLKSQVV-DKRPR--RSLDSPRLDGYVLASSPIPHTDWNEELKLYAQSH 113
STT +TDSS+ +V +P SLD +L + A PI ++ + KLYA H
Sbjct: 309 STTTSQTDSSYNDVHDIVGSSQPDYLESLDYSQLFSILYALYPINFLEFLRDPKLYASKH 368
Query: 112 GY 107
+
Sbjct: 369 NF 370
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = -1
Query: 689 EKYECKVCL-ERQRDAVL---MPCRHFC--VCVQCYFGLDQK-CPTCRQDVTDFIK 543
++ EC +CL E ++ L +PC H C+ Y + CP C+Q VT+ ++
Sbjct: 494 DQRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLE 549
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 683 YECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCRQDVTDFIKIFVV 531
+ C +C + R + C H C QC +K PTC Q D +F V
Sbjct: 252 FVCLICKKDYRSPIATTCGHH-FCEQCAITRYRKTPTCIQCGADTKGLFSV 301
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 445 DLKNSVDWNGSTRKLLRVLNKRAYRQVLQCNGRYYW 338
D K++V GS R+ N+R++R Q +Y W
Sbjct: 730 DGKHNVVLGGSFATATRISNRRSFRNFYQAGYKYAW 765
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 529 NKMVFDVYYNGYYVEKKFSKEFLIHIAPDLKNSVDW 422
N +V VY NG +F HIAP+ + DW
Sbjct: 301 NSVVSSVYMNGSNSVPRFILYSTTHIAPETEIIGDW 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,875
Number of Sequences: 5004
Number of extensions: 57703
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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