Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11h03
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical... 53 3e-07
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 51 1e-06
U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical pr... 45 6e-05
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 40 0.003
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 38 0.013
Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical pr... 37 0.022
Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical pr... 36 0.029
Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical pr... 36 0.051
AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical ... 35 0.089
Z11115-11|CAA77447.1| 161|Caenorhabditis elegans Hypothetical p... 33 0.27
U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z70208-5|CAA94134.1| 201|Caenorhabditis elegans Hypothetical pr... 32 0.47
AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical ... 32 0.47
Z92803-1|CAB07242.2| 384|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 31 0.83
U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical pr... 31 0.83
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 31 0.83
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 31 0.83
AF304126-1|AAG50239.1| 384|Caenorhabditis elegans RING and zinc... 31 0.83
U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical p... 31 1.4
Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical pr... 31 1.4
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 31 1.4
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 31 1.4
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 31 1.4
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 31 1.4
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 31 1.4
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 31 1.4
Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical pr... 30 2.5
L23645-3|AAK26139.1| 211|Caenorhabditis elegans Zinc finger pro... 30 2.5
U41026-2|AAM51523.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical pr... 29 4.4
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 29 4.4
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 29 5.8
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 7.7
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 7.7
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 7.7
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 7.7
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 28 7.7
>AF039047-10|AAB94229.2| 400|Caenorhabditis elegans Hypothetical
protein K11D12.9 protein.
Length = 400
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 680 ECKVCLERQRDAVLMPCRHFCVCVQCYFGLD-QKCPTCRQDVTDFIKIFV 534
EC +CL + V MPCRH C CY D ++CPTCR + + I +F+
Sbjct: 351 ECCICLATKPSIVFMPCRHLITCSGCYDASDFRECPTCRSTIENSITVFM 400
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 680 ECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQK---CPTCRQDVTDFIKI 540
EC +CL RD V++PCRH CVC C L K CP CR I++
Sbjct: 268 ECIICLSDIRDTVILPCRHLCVCSNCADSLRYKHNNCPICRSPFRALIRL 317
>U40945-6|AAS80346.1| 437|Caenorhabditis elegans Hypothetical
protein F10D7.5c protein.
Length = 437
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRHFCVCVQC---YFGLDQKCPTCRQDVTDFIKIF 537
+ E EC +C++ ++VL C H C+C +C CP CR V D IK +
Sbjct: 380 VNEGDECTICMDAPVNSVLYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 435
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRHFCVCVQC---YFGLDQKCPTCRQDVTDFIKIF 537
+ E EC +C++ ++VL C H C+C +C CP CR V D IK +
Sbjct: 560 VNEGDECTICMDAPVNSVLYTCGHMCMCFECGRRLLTTKGTCPICRAPVQDVIKTY 615
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRH-FCV-CVQ-CYFGLDQ--KCPTCRQD 561
IE+ C +CL+R + L+PC+H FC C++ C L + KCP CR +
Sbjct: 37 IEQLLTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAE 86
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRH-FCV-CVQ-CYFGLDQ--KCPTCRQD 561
IE+ C +CL+R + L+PC+H FC C++ C L + KCP CR +
Sbjct: 37 IEQLLTCPICLDRYKQPKLLPCQHTFCYPCLESCADTLHRNLKCPECRAE 86
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 37.5 bits (83), Expect = 0.013
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 692 EEKYECKVCLERQRDAVLMPCRH-FC-VCVQCYFGLDQKCPTCR 567
+E + C VCL+ + ++ C H +C C++ + +++KCP CR
Sbjct: 3 DEDFCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCR 46
>Z81505-1|CAB04122.1| 673|Caenorhabditis elegans Hypothetical
protein F16A11.1 protein.
Length = 673
Score = 36.7 bits (81), Expect = 0.022
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCRQDVTDFIK 543
I E Y C +C L+PC H C C +D CP CR+ + + I+
Sbjct: 559 IPEDY-CTICFAAPGSTTLLPCNHDGFCSDCCNMMDH-CPLCRKPIEERIQ 607
>Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical
protein C56A3.4 protein.
Length = 221
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -1
Query: 692 EEKYECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQK----CPTCRQDVTDF 549
E + +C +C ++ +L PC H C C C ++ CP C V F
Sbjct: 165 EARLQCFLCKLTEKRVLLRPCNHLCFCEPCNDTFQKQIPLLCPICHMHVQSF 216
>Z46787-7|CAA86745.1| 235|Caenorhabditis elegans Hypothetical
protein C16C10.7 protein.
Length = 235
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = -1
Query: 686 KYECKVCLERQRDAVLMPCRH-FC-VCVQCYFGL---DQKCPTCRQDV 558
++EC +CL+ +DAV+ C H FC C+ + +Q CP C+ +
Sbjct: 23 RFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAI 70
>AF067611-1|AAC19182.1| 603|Caenorhabditis elegans Hypothetical
protein C45G7.4 protein.
Length = 603
Score = 34.7 bits (76), Expect = 0.089
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 13/54 (24%)
Frame = -1
Query: 677 CKVCLE----RQRDAVLMPCRH-FC------VCV-QCYFGLDQ-KCPTCRQDVT 555
C+VC E R L+PC H FC +C+ Q Y+ LD KCPTCR++ T
Sbjct: 24 CEVCFEVFNHENRPPKLLPCGHNFCESCIFSLCLHQEYYLLDSIKCPTCRREFT 77
>Z11115-11|CAA77447.1| 161|Caenorhabditis elegans Hypothetical
protein ZK637.14 protein.
Length = 161
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 644 VLMPCRH--FCVCVQCYFGLDQKCPTCRQDV 558
++MPC+H C+ + Q CPTCRQ V
Sbjct: 107 IVMPCKHRFHYFCLTLWLEAQQTCPTCRQKV 137
>U67953-1|AAQ91892.1| 398|Caenorhabditis elegans Hypothetical
protein ZC13.1b protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 689 EKYECKVCLERQRDAVLMPCRH-FC-VCVQCYFGLDQKCPTCRQDVT 555
E+ C VC + + C H FC C++ + CP CR +VT
Sbjct: 333 EEQPCAVCHGDLLQPIKLECTHVFCKFCIETWLDQKSTCPICRAEVT 379
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -1
Query: 677 CKVCLERQR-DAV--LMPCRHF--CVCVQCYFGLDQKCPTCRQDV 558
C +C E DA +PC H C++ +F Q CPTCR D+
Sbjct: 292 CIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCRTDI 336
>Z70208-5|CAA94134.1| 201|Caenorhabditis elegans Hypothetical
protein F54B11.5 protein.
Length = 201
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRH-FCV-CV--QCYFGLDQKCPTCRQDVTDFIK 543
C +C+E D +L+PC H FC+ C+ + + D CP C+ + + I+
Sbjct: 129 CVICMENIND-LLLPCLHAFCIRCIANEMEYRHDFSCPICKTKIRNPIE 176
>AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical
protein T22B2.1 protein.
Length = 955
Score = 32.3 bits (70), Expect = 0.47
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = -1
Query: 680 ECKVCLE---RQRDAV-LMPCR--HFCVCVQCYFGLDQKCPTCRQDVTD 552
EC VCLE + +D V C+ + CVQ +F + + CPTC + D
Sbjct: 899 ECLVCLEDMVKNQDTVKCSTCKRQYHTTCVQKWFKIKRICPTCNAGLLD 947
>Z92803-1|CAB07242.2| 384|Caenorhabditis elegans Hypothetical
protein K01G5.1 protein.
Length = 384
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 680 ECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTCRQDVTDFI 546
+C +C D ++ C+H FC C F KCP C+Q+ + +
Sbjct: 240 DCFICGNPFVDPIVTKCKHYFCTGCALKSFQKSSKCPICQQNTENIM 286
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 505 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 356
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 505 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 356
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>U50135-6|AAN63429.1| 925|Caenorhabditis elegans Hypothetical
protein C52E12.1 protein.
Length = 925
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = -1
Query: 692 EEKYECKVCLERQRDAVLMPCRHFCVCVQCYF-----GLDQKCPTCRQDV 558
++ +C +C ++ + CRH VC +C G + CP CR D+
Sbjct: 84 QKSIDCDICCKKNDVFGIGSCRH-PVCAECVIRMRILGNSKTCPVCRSDI 132
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 505 YNGYYVEKKFSKEFLIHIAPDLKNSVDWNGSTRKLLRVLNKRAYRQVLQC 356
YNG Y++ F ++ L+ + D S+ WN ++ R Y + LQC
Sbjct: 57 YNGTYIDDVF-RDHLLKLVVD--KSITWNQVIHSVINTKTDRIYSKCLQC 103
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 668 CLERQRDAVLMPCRHFCVCVQCYFGLD-QKCPTCRQDVTD 552
CL L PC H CV C + ++CP CRQ + +
Sbjct: 611 CLNSVATVKLDPCGHRVACVDCTEKVAIRRCPVCRQFINE 650
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 695 IEEKYECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCRQDVTDFIKIF 537
+E + C +C++ + AV+ C H CV C L ++C CR+ + I+
Sbjct: 714 LELETNCAICMDL-KIAVVFNCGH-TACVDCADKLKKQCHICRKTIETMQPIY 764
>AF304126-1|AAG50239.1| 384|Caenorhabditis elegans RING and zinc
finger protein protein.
Length = 384
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 680 ECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTCRQDVTDFI 546
+C +C D ++ C+H FC C F KCP C+Q+ + +
Sbjct: 240 DCFICGNPFVDPIVTKCKHYFCTGCALKSFQKSSKCPICQQNTENIM 286
>U23484-5|AAK93844.1| 590|Caenorhabditis elegans Hypothetical
protein EEED8.16 protein.
Length = 590
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 677 CKVCLERQRDAVL-MPCRH--FCVCVQCYFGLDQKCPTCR 567
C VCLER D+VL + C H C++ + D CP CR
Sbjct: 260 CAVCLERMDDSVLAILCNHSFHARCLEQW--ADNTCPVCR 297
>Z81075-6|CAB03049.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRH--FCVCVQCYFGLDQKCPTCR 567
C VC E + +PC H C+ + D CPTCR
Sbjct: 335 CVVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCR 373
>Z81070-13|CAB03009.1| 564|Caenorhabditis elegans Hypothetical
protein F26E4.11 protein.
Length = 564
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRH--FCVCVQCYFGLDQKCPTCR 567
C VC E + +PC H C+ + D CPTCR
Sbjct: 335 CVVCWELLGTSRRLPCSHQFHDWCLMWWLAQDSSCPTCR 373
>Z19156-2|CAE17940.2| 275|Caenorhabditis elegans Hypothetical
protein T02C1.2 protein.
Length = 275
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 692 EEKYECKVCLERQRDAVLMPCRH-FCV-CVQCYFGLDQKCPTCRQ 564
E+ C +C + + + C+H FC C+ L +KCP+C+Q
Sbjct: 95 EDDVLCTICYDIIVEPHTLRCQHSFCKKCIDQCLPLTRKCPSCQQ 139
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRHFCVCVQCYF------GLDQKCPTCRQDVTDFIKIFV 534
CK+C + +++ + PC H +C +C G CP CR ++ ++ +
Sbjct: 390 CKICDDNEKNIKIEPCGHL-LCAKCLANWQDSDGGGNTCPFCRYEIKGTNRVII 442
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 683 YECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCR 567
+EC VCLE + VC C L Q CPTCR
Sbjct: 88 FECPVCLEYMLPPYMQCSSGHLVCSNCRPKL-QCCPTCR 125
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRHFCVCVQCYF------GLDQKCPTCRQDVTDFIKIFV 534
CK+C + +++ + PC H +C +C G CP CR ++ ++ +
Sbjct: 390 CKICDDNEKNIKIEPCGHL-LCAKCLANWQDSDGGGNTCPFCRYEIKGTNRVII 442
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRHFCVCVQCYF------GLDQKCPTCRQDVTDFIKIFV 534
CK+C + +++ + PC H +C +C G CP CR ++ ++ +
Sbjct: 373 CKICDDNEKNIKIEPCGHL-LCAKCLANWQDSDGGGNTCPFCRYEIKGTNRVII 425
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRHFCVCVQCYF------GLDQKCPTCRQDVTDFIKIFV 534
CK+C + +++ + PC H +C +C G CP CR ++ ++ +
Sbjct: 373 CKICDDNEKNIKIEPCGHL-LCAKCLANWQDSDGGGNTCPFCRYEIKGTNRVII 425
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 683 YECKVCLERQRDAVLMPCRHFCVCVQCYFGLDQKCPTCR 567
+EC VCLE + VC C L Q CPTCR
Sbjct: 154 FECPVCLEYMLPPYMQCSSGHLVCSNCRPKL-QCCPTCR 191
>Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical
protein C30F2.2 protein.
Length = 203
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -1
Query: 677 CKVCLERQRDAVLMPCRHFC---VCVQCYFGLDQKCPTCRQ 564
C CLE D PC FC +C++C + CP C++
Sbjct: 10 CPTCLEDYDDNSHRPCVGFCGHSICLKCQSKI-VSCPLCKR 49
>L23645-3|AAK26139.1| 211|Caenorhabditis elegans Zinc finger
protein protein 1,isoform b protein.
Length = 211
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 313 HVYNRSIRTHSTTVKRTDSSHRLKSQVVDKRPRRSLDSP 197
H +NR++ + KR D+ HR ++ + R + SL +P
Sbjct: 37 HNHNRTLLKRTVGGKRKDTGHRHRTSTIPPRDKSSLHAP 75
>U41026-2|AAM51523.1| 295|Caenorhabditis elegans Hypothetical
protein C28G1.6 protein.
Length = 295
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Frame = -1
Query: 677 CKVCLERQRDAVLMP----CRH-FC-VCVQCYF-GLDQKCPTCRQDV 558
C++C E R +P C H C VC F + KCPTCRQ +
Sbjct: 6 CEICEESYRSESRIPKNLNCGHVICPVCASKLFENPEVKCPTCRQPI 52
>Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical
protein W02A11.3 protein.
Length = 489
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -1
Query: 692 EEKYECKVCLERQRDAVLMP---CRHFC--VCVQCYFGLDQKCPTCRQDV 558
E++ C VCL D + C H C+ + ++++CP CR+++
Sbjct: 428 EDEDTCTVCLSSFEDGESIQKLRCNHVFHPECIYKWLDINKRCPMCREEI 477
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -1
Query: 689 EKYECKVCLERQ--RDAVLMPCRH-FCV-CVQCYF--GLDQKCPTCRQDV 558
E+ +C +CL + ++ + C H FC C+ + L CP CR+DV
Sbjct: 64 EELQCTICLSTRFSQECRIEGCNHSFCFSCISEWVCQSLRPSCPMCRKDV 113
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = -1
Query: 695 IEEKYECKVCLE-RQRDAVLMPC-----RHFCVCVQCYFGLDQKCPTCRQDVTD 552
+E+K EC VCLE + + C ++ C Q +F + + CPTC + D
Sbjct: 886 LEDK-ECLVCLEDMMEEHETLKCSNCKRQYHTGCAQKWFKVKRICPTCNSGLLD 938
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = -2
Query: 454 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 281
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 280 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 143
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = -2
Query: 454 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 281
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 280 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 143
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = -2
Query: 454 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 281
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 280 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 143
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.3 bits (60), Expect = 7.7
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = -2
Query: 454 IAPDLKNSVD--WNGSTRKLLRVLNKRAYRQVLQCNGRYYWPDGTKFVSHVYNRSIRTHS 281
+ PD N++D WN RV + Y ++ + W + +H +S
Sbjct: 2330 VTPDGANALDVQWNAVLDPKNRV---KGYIIEIRNSDTPVWQEIGGVTNHDAGKSTYFKK 2386
Query: 280 TTVKRTDSSHRLKSQVVDKRPRRSLDSPRLDGYVLASSPI-PHTDWN 143
T +D+ + ++ +VVD+R R + SP ++P+ P T+ N
Sbjct: 2387 LTGLDSDTLYFIRIKVVDQRQRVGVPSPEAQARTGCAAPLSPPTNLN 2433
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -1
Query: 680 ECKVCLERQ---RDAVLMPCRH--FCVCVQCYFGLDQKCPTCRQ 564
EC +CLE ++ + CR C + ++CPTCR+
Sbjct: 441 ECAICLEEMYNFKETIKCECRRRFHSKCATKWLNEKRECPTCRK 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,756,594
Number of Sequences: 27780
Number of extensions: 342944
Number of successful extensions: 1058
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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