Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g18
         (472 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC...   229   2e-60
AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA...   229   2e-60
AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB...   214   4e-56
BT004880-1|AAO45236.1|  348|Drosophila melanogaster GH14121p pro...    32   0.45 
AE014297-786|AAF54268.1|  348|Drosophila melanogaster CG8043-PA ...    32   0.45 
AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p pro...    31   0.59 
AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-P...    31   0.59 
AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-P...    31   0.59 
AL021086-2|CAA15933.1|  995|Drosophila melanogaster EG:86E4.2 pr...    27   9.7  

>AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC,
           isoform C protein.
          Length = 155

 Score =  229 bits (559), Expect = 2e-60
 Identities = 112/142 (78%), Positives = 124/142 (87%), Gaps = 3/142 (2%)
 Frame = -3

Query: 449 MADQTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 279
           MADQ E+AFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+T
Sbjct: 1   MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWT 60

Query: 278 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 99
           G+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE G
Sbjct: 61  GDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHG 120

Query: 98  DIVTIGECRPLSKTVRFNVLKV 33
           DIVTIGECRPLSKTVRFNVLKV
Sbjct: 121 DIVTIGECRPLSKTVRFNVLKV 142


>AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA,
           isoform A protein.
          Length = 155

 Score =  229 bits (559), Expect = 2e-60
 Identities = 112/142 (78%), Positives = 124/142 (87%), Gaps = 3/142 (2%)
 Frame = -3

Query: 449 MADQTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 279
           MADQ E+AFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+T
Sbjct: 1   MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWT 60

Query: 278 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 99
           G+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE G
Sbjct: 61  GDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHG 120

Query: 98  DIVTIGECRPLSKTVRFNVLKV 33
           DIVTIGECRPLSKTVRFNVLKV
Sbjct: 121 DIVTIGECRPLSKTVRFNVLKV 142


>AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB,
           isoform B protein.
          Length = 154

 Score =  214 bits (523), Expect = 4e-56
 Identities = 104/141 (73%), Positives = 120/141 (85%), Gaps = 2/141 (1%)
 Frame = -3

Query: 449 MADQ-TEKAFQKQ-ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 276
           MADQ TE++F+KQ A V + RK    +K  R ++ +GLGF+ P EAI+GTYIDKKCP+TG
Sbjct: 1   MADQQTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGTYIDKKCPWTG 60

Query: 275 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 96
           +V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE GD
Sbjct: 61  DVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGD 120

Query: 95  IVTIGECRPLSKTVRFNVLKV 33
           IVTIGECRPLSKTVRFNVLKV
Sbjct: 121 IVTIGECRPLSKTVRFNVLKV 141


>BT004880-1|AAO45236.1|  348|Drosophila melanogaster GH14121p
           protein.
          Length = 348

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 129 QMHGHIPVPFLEPIVFG*VVKVIAADHDSSLHLHFLNDAG 248
           ++HG   VPFL+ +    V ++ +    +S++ HFLN AG
Sbjct: 50  RVHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAG 89


>AE014297-786|AAF54268.1|  348|Drosophila melanogaster CG8043-PA
           protein.
          Length = 348

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 129 QMHGHIPVPFLEPIVFG*VVKVIAADHDSSLHLHFLNDAG 248
           ++HG   VPFL+ +    V ++ +    +S++ HFLN AG
Sbjct: 50  RVHGAEVVPFLQGLATNDVARIQSPGGPASMYAHFLNKAG 89


>AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p
           protein.
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 269 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 129
           S++ RI+    + M+  R++ I+  Y HYLPK+       R +  HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298


>AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-PB,
           isoform B protein.
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 269 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 129
           S++ RI+    + M+  R++ I+  Y HYLPK+       R +  HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298


>AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-PA,
           isoform A protein.
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 269 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 129
           S++ RI+    + M+  R++ I+  Y HYLPK+       R +  HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298


>AL021086-2|CAA15933.1|  995|Drosophila melanogaster EG:86E4.2
            protein.
          Length = 995

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 377  RKDMRHHKNVGLGFKTPREAIEGTYIDKKC 288
            RK++ HH     G  T R++  GT+I K+C
Sbjct: 953  RKELPHHLFACTGRSTLRDSPIGTFIRKRC 982


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,799,511
Number of Sequences: 53049
Number of extensions: 459557
Number of successful extensions: 994
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)