Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g15
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    30   1.4  
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818...    27   7.7  

>01_06_0481 -
           29646245-29646371,29646474-29646556,29646672-29646752,
           29646843-29646899,29647007-29647094,29647304-29647374,
           29647457-29647585,29647662-29648051,29648332-29648517,
           29648612-29648692,29648787-29648879,29648966-29649086,
           29649200-29649409,29649560-29649727,29649898-29650065,
           29650144-29650311,29650453-29650620,29650738-29650905,
           29651023-29651190,29651567-29651734,29652391-29652558,
           29652645-29652812,29655720-29655887,29656069-29656236,
           29656391-29656558,29656670-29656837,29657525-29657664,
           29658033-29658221,29658243-29658315,29658379-29658452,
           29658535-29658654,29658718-29658738,29658794-29658999,
           29659094-29659271,29660066-29660126,29660232-29660341,
           29660427-29660558,29661091-29661258,29661339-29661465,
           29661794-29661831,29663321-29663422,29663505-29663562,
           29663659-29663760,29663844-29663990,29664098-29664234,
           29664313-29664462,29664561-29664720,29665820-29665878,
           29666025-29666181,29666288-29666433,29666523-29666666,
           29667242-29667376
          Length = 2344

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
 Frame = +3

Query: 306 KLCINFVNS------SQNIGKLKKKNYTRLF*YWSY 395
           +LCINF N       +QN+ K++++ YTR    WSY
Sbjct: 449 QLCINFTNEKLQQHFNQNVFKMEQEEYTREQINWSY 484


>05_06_0219 +
           26479708-26479710,26481045-26481173,26481675-26481818,
           26481936-26482081,26482185-26482341,26482489-26482547,
           26482787-26482946,26483020-26483169,26483279-26483415,
           26483518-26483664,26483733-26483834,26483917-26483974,
           26484084-26484185,26484322-26484379,26484717-26484775,
           26486488-26486525,26486688-26486814,26486900-26487067,
           26487879-26488010,26488089-26488198,26488273-26488333,
           26488761-26488938,26489041-26489246,26489431-26489550,
           26489631-26489729,26489968-26490156,26490291-26490430,
           26491149-26491316,26491438-26491605,26491764-26491931,
           26492250-26492417,26492533-26492700,26492853-26493020,
           26493118-26493285,26493471-26493638,26493756-26493920,
           26494679-26494850,26495012-26495175,26495296-26495405,
           26495481-26495596,26495686-26495766,26495849-26496034,
           26496203-26496547,26496637-26496777,26496869-26496916,
           26497162-26497242,26497350-26497406,26497495-26497575,
           26497675-26497757,26497842-26497968
          Length = 2159

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +3

Query: 306 KLCINFVNS------SQNIGKLKKKNYTRLF*YWSY 395
           +LCINF N       +QN+ K++++ Y R    WSY
Sbjct: 448 QLCINFTNEKLQQHFNQNVFKMEQEEYNREQIDWSY 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,599,494
Number of Sequences: 37544
Number of extensions: 156666
Number of successful extensions: 181
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)