Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g15
         (559 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121668-1|AAM51995.1|  600|Drosophila melanogaster RE14390p pro...    29   5.6  
AE013599-2316|AAF57976.1|  543|Drosophila melanogaster CG8303-PA...    29   5.6  
AY060809-1|AAL28357.1| 1272|Drosophila melanogaster GH27809p pro...    28   9.8  
AE013599-3941|AAF47260.2| 1272|Drosophila melanogaster CG30421-P...    28   9.8  

>AY121668-1|AAM51995.1|  600|Drosophila melanogaster RE14390p
           protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 206 KVFNM*YLS*IIIIFATYFFCLPVTL 283
           KVFN+ Y +  ++IFA  +F L +TL
Sbjct: 556 KVFNVLYYAGYVVIFAVLYFALTLTL 581


>AE013599-2316|AAF57976.1|  543|Drosophila melanogaster CG8303-PA
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 206 KVFNM*YLS*IIIIFATYFFCLPVTL 283
           KVFN+ Y +  ++IFA  +F L +TL
Sbjct: 499 KVFNVLYYAGYVVIFAVLYFALTLTL 524


>AY060809-1|AAL28357.1| 1272|Drosophila melanogaster GH27809p
           protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 260 NRLQR*LLFMINITC*KLLKHSPAKLVSFVEIIQF 156
           NR+ + L   +N+   +  KHSPA  ++F+EI+ F
Sbjct: 178 NRIAQHLSSTVNVVSEE--KHSPANRIAFIEIVPF 210


>AE013599-3941|AAF47260.2| 1272|Drosophila melanogaster CG30421-PA
           protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 260 NRLQR*LLFMINITC*KLLKHSPAKLVSFVEIIQF 156
           NR+ + L   +N+   +  KHSPA  ++F+EI+ F
Sbjct: 178 NRIAQHLSSTVNVVSEE--KHSPANRIAFIEIVPF 210


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,091,799
Number of Sequences: 53049
Number of extensions: 309782
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)