Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11g10
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   168   1e-42
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   160   3e-40
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    28   1.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.3  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     27   4.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.7  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   7.6  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  168 bits (408), Expect = 1e-42
 Identities = 83/136 (61%), Positives = 100/136 (73%)
 Frame = -3

Query: 415 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 236
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 235 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 56
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122

Query: 55  VRLARDYDALDVANKM 8
           V+L+ D DALDVAN++
Sbjct: 123 VKLSADADALDVANRI 138


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  160 bits (388), Expect = 3e-40
 Identities = 79/136 (58%), Positives = 97/136 (71%)
 Frame = -3

Query: 415 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 236
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 235 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAY 56
             P+ SE+AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+
Sbjct: 63  VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122

Query: 55  VRLARDYDALDVANKM 8
           V+L+ D DALDVAN++
Sbjct: 123 VKLSADADALDVANRI 138


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
 Frame = -1

Query: 276 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSTQVQTSTI------SRLQSRNSM 115
           + L  IA+  T SL  +   K+  R +  T PW +LS+Q     I      +RL S+N  
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRLTSKNKT 392

Query: 114 I*MLL---KSTLSSGLMVRRKRTYDSL 43
           +  +     +T+SSG+M +  R  + +
Sbjct: 393 VSNVYDESNATISSGVMQKDLRKTEEI 419


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 143 MVLVCTCVDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQ 274
           MV++  C+D KD  + +     C  + + EF DV+  + +   Q
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 251 IHAISLRQRLPWVLRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 424
           + A  +  R P   R P+  RF+ L S++   + + PY+ P   F     S +    + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255

Query: 425 YFFLSLNPSL 454
               S  PSL
Sbjct: 256 RRTKSATPSL 265


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 26  QCVIISSESYVRFLLTIRPDESVDFSNIY 112
           +C+ I  E +  FL  I+P E+V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 23  VQCVIISSESYVRFLLTI--RPDESVDFSNIYIIEFLDCSLDMV 148
           V   I S +S+  FL+      D+SVD  ++ I+   +CS D++
Sbjct: 45  VVTTITSYQSFANFLVDYCKNQDQSVDIKSLCILGTFNCSADIL 88


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 515 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 426
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/51 (17%), Positives = 25/51 (49%)
 Frame = -3

Query: 256  MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 104
            + A+++ +F    E  ++  +DN T   I H  + ++ + A     +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,758
Number of Sequences: 5004
Number of extensions: 44037
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)